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mmu_ciProm1_4421
Basic information of circular RNA
PanCircBase ID:
mmu_ciProm1_4421
mm39_Chr. Position ID:
chr5|44216046|44220467|-
Gene name:
Prom1
Transcript:
ENSMUST00000074113.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
4421
Exon/intron sizes in nt:
4421
Flanking exon/introns:
chr5:44215994-44220467
Splice length:
4421
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCTTTTGTTTTTGTTATTAAGAATAGCAAATAGGAGATTTTTTTTTTTTTTTTTTTTTTTGGCTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTATAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCTTGACTGAGGATTTTTAGGGAATGCTGTCGTGTTTTATAAACCTCATTTTAGTGGCAGCAGAAATTTCAAAATTGGTTGTTGAGGAGACCCAAGTTATGTGTCATTCTAAAATTTCCTGAAAAGAAATACTAGATTTTGTTTGTTTGTTTGTTTGTTTGTTAGTTTGTTTTAGCTAAGGGAGGGAAACTCTCTAGACAGAAATGCTTGAGAATCCTTAGAAGCCAAAACCAGCCACAGAGAGGTTGTTTTCGAAAATAGTTTGCTACACAACAACTTCCCATCTTCGCTCACTGCTGGATTCGTAGTGCACCTGCTTAGGAGTGCACACTTGGTTGGAATTAAAGGAATGACAGAGATAAGCAAGGTTGTTCATGGCAAGCAGGGGCAGGACCTTGTGGCTCCAGGGCAAAGGGTGATAAGAAAATCCATAGGCATGAAGCAGCACACTGAGGAACAGAGGAGGTCACTTTGAGCAGAAGCGCTTATCACTAGTACTGATTCTGGCAGAAGTGGAGAGGACCAGGGGTGGGTGGGTACGGGATGCTCTGGGCGTGCTGGGGACCAGGCGAGTAGAGGTCAGGTGTGGAAAAGTTGAACAGTTGGTCCAGGCTGGATAACAGGAGGTGAGTGGAGGAGAGTGGTCAGGGTTTTCAGAGAGCTTTAAAGGAGCTTGCTGATCTCTGCCCAGCCCACCTGGCACGGCTGATGTGCTCCTTTTAGTTCCGTTGACATTGGTTAGTTGTGAGTGGAAGACCCTGACAACACATAGATCTTTGCGTGTTGAATGTAGGGTGTTAAAAACCAGAGAAACGTGCCTGTCATATCCTCAGCTCCCAGTGAAGTAAGTAAGACATAGCGCTCTTTCCTATTCTGCACTGAGGATGGTGTCCAGGGGAACAAAGAGATGGCCAGCACAGGTCTGAATGTGAATGCCCACTGCCCCAGTGTCTAATGAGTCCAGACCTTGGAATTAGAAACATCATCAGCTCCGTTAGCACCTTAGTTTGTAATAGGTGACACAGGAGAAGGATGACTGTAAAAGCCAAAGAGGGAAGCCATTTCATCTGGCAGCCGGGCCAACAGTAGGACTGTTGGAGAGGGAGCCAGCCACATTACCTCCTGCTCTCTACCCTCCTAAGACTCTAAAGAGTACTCATCCGCCTTCAGTGCTCTCGTTTCTTTATATCACCAAAGCATCGTCCAGATTGGCTCACATCTCTGGGCGAAATACAATACCTGTTGCTTTCCATGTGTCTGAAGAGCATTAGCACGCCTGACTAATCCGATAGCCCAGATAGCAAGGGTTCTTCAGGGTGTGGGTAGAAACAGGAACATCACCTCACTTGGACCCCTGTCTGGAGACTCCAAGGTGGTGGGGGAGCCCTGGAAGTGGTCCCAACGACCTGTTTGACACCTCTTCAGAGGGAGAAGGCACACCCCTCGTCTGAATTCACATCCCATTTTTCATGAGGAAAGCAGCACACCCCAGGGATCTTCGAGGGTACTTAGAAGACAGTACACTGCAGGAATTATTGGGTTTTACTGTCTGCAATAGGCTTGGGCCTGTAACCTTCACGAGCATCAGCTCATCCCAAACATGATGAAGCACTGATAGCAAAGTGACCGTTATGTCACTGGCTGCCATTTCCTTTCTAGTTTTTGTAAAGCCTCATCAGGGATATTTTCTGCTTCTCCAAGACTCAGCGTGGCATTGGTAGCAATACTATAAATGTTCCCTAAAGACTTTGGTACTGTTCTTCAGGGCTGGCTACTGGTATTTTTAGAAGATCCCTAAATGGTTATAATAGGCAACTGAATAGAGAATCATAGGACACCAAGGTATAGAATCACGATTGTAACTGCTGTGTAACACAGACATAAATTTATCCCATGTGACAACTCATTTAGAAAGAGAGCAGTGAAAATTCTCTCACCCAAGTCCACGGAGGTGTTTATGGTACCATGTCAAATTCACCAGGCAAGGCTGATTGTTGGGTTGGAGAAATTACAAAGGAATTAGATGTTTCTTATGGCTTATCAGTAGAGTGACCGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCACAACGAAGGCAAGTCTTATAAATGACAACATTTAATTGGGGCTAGCTTACTGGTTAAGAAGTTCAGTCCATTATCCTCAAGGCAGGACTATGACAGCATCCAGGCAGGCAGGGTGCAGGAGGAGCTGAGAGTTCTACATCTTTATATGAAGGCTGCTGAAAGAATACTGGCTTCCAGACAGCTAGGATGCGAGAGTCTTAAAACCCATGCCCACGATGATACACCTACTCCAACAAGGCCACACCTCCACATAATACTACTCCCTGAGTCAAGCATGTACAAACCATCACAGTGACCTTTCTAATCCAGTATGACCAGCCACAATACCAACTGAGGACAGATTTCCCCAAATTACTCAGTTGTAATCTTCACATGAGAGCTCTCTTAAAATACAGATACCTGGCCTTCTTCAGACCTGGACTCATGTACTGTAAGGGAACAGGAGCCAGAAATTAGTTACACTGGGAGGTCCTCAGGGTTGGTAGATGTGGGAGTCAAGGTTGTGAGTGGTATCAAGCTTGTGGGCTCACCCAGTAAGACAGAATAAGGATTGTCAAGGTGACCCTTGTGGACATGTATATCGGAAATGTCCCCAACTCTCAACATTTTCAGTGTTTTGGTTAAAAATTATTAGAATCACAAGCATTGTTCTTTCAGGGGTTTGAGGATCTGTCCCAGGTAAGAAACAGTTTGCACACTTTCAAATGTCCAAACCAGACAACTTCAAGACGGCGACATGGAGAATGACACAGGCACCTCAGTTTATTTTGCTCCAGAGGGCATTTAGAAACAACTATAGCATGAGTGGAGAAATGGCTCAGTGGGTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAACCCCAGCAACCACATGGTGGCTTACAACTACCCATAATGAGATCTGATGCCCTCTTCTGGTGCGTTGAAGTCAACTACAGTGTACTTATATATAATAATAAGCAAGCAAGGACTGAGCGAGGGGGCTGACCAGAGTGAGCAGGGTTGACCGGAGTGAGCAGAGGTCCTAAAATTCAATTCCCAACAACCACATGAAGGCTTACAACCATCTGTACAACTACAGTGTACTCACATACATAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAATGAAGGAAGAAAGAGAGAAGAAAAGAAAAATGCACTAAGAGCTGCTTTATTTTCCTTTCCTCCTTATGGTTTGGTTCATTTTCCTGACTGACTGACTGACTGACTGACTGGTCTCCATCTCTGGACCATGCTGAGGAATCTCTGGTCTTAGGTTGTGGCTTTTATGCCATTAGCACATCAGTTGACTTAGTTTTGTTTGGGTAAGTATTGCATGTGGGGCTTGCTGTCTTGGAGTTGGTATAACAGGAGATGGCAATATGGTAGCCAGGTCTTCTAAGTGAGAACGATACCTCTAACGGCAAGTTCAGGGACACTGGGTCATATGAAAGAAGACATACAATGCCTAGACTTTCTGGAGGAGGCAGCATCTCTTCTAAGACTTGAGTTTCCTCCAATGAGTGATGAATGAGCATGGATGAGTGATGGATGATAGGGAGGCAACCTGGGAAGTCAGGGTGAGGAGGGAAAAGAGAAAATGATTTGCCAGAACGACAACAACCAACTTAGAATGGCCAAGAAAAATGAGGAGGTGAAGCCCAGATTGGCTAGTGAAGCTCCATGCTGGGAAGCTTGCATTAGAAATGGTGGAACTTCATTGGAAGCTGTTAAACAAGGGAAGGACATTTCCAGATTTCATCCTAGAGGGCGCACTTTAGAAGAGTTGTCTTTGATTCTTGGACTAGAGGCAGCCCTTGTTACTGCTTCATGAAGATCATATAGCAAGCATGTTAACATCTGTAACTGCCCTGTGATTGCTTTTTCCCTAACTGATGATCATGCTGACTTTGAACCTTTCAAAAACCCAAACTTGAATTGCGGAACTTGACTCTGAAATACTGGTTCTCCATATGCACTCAAGAATCTCTATCCTGTTCTCATGTGGATCCCCACCATGTTATTTTACCATGTGGACTTCGGTTATGGTGAATGACTCATGTGACTTTTCTGTTTTATTTCGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGGACTTCGGTTATGGTGA
59.03
GGGCTACACAGAGAAACCCT
59.02
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGGACTTCGGTTATGGTGA
59.03
AGGGCTACACAGAGAAACCC
59.02
151
PCR template sequence:
AATCTCTATCCTGTTCTCATGTGGATCCCCACCATGTTATTTTACCATGTGGACTTCGGTTATGGTGAATGACTCATGTGACTTTTCTGTTTTATTTCGAGTAAGCTTTTGTTTTTGTTATTAAGAATAGCAAATAGGAGATTTTTTTTTTTTTTTTTTTTTTTGGCTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
38
Interacting miRNAs (#binding sites)
mmu-miR-181a-5p(2), mmu-miR-339-5p(2), mmu-miR-149-5p(2), mmu-miR-351-5p(2), mmu-miR-382-5p(2), mmu-miR-340-5p(2), mmu-miR-297a-5p(2), mmu-miR-224-5p(2), mmu-miR-207(2), mmu-miR-137-3p(1), mmu-miR-9-5p(1), mmu-miR-199a-5p(1), mmu-miR-101a-3p(1), mmu-miR-205-5p(1), mmu-miR-152-3p(1), mmu-miR-18a-5p(1), mmu-miR-298-5p(1), mmu-miR-101b-3p(1), mmu-miR-709(1), mmu-miR-125b-5p(1), mmu-miR-138-5p(1), mmu-miR-181b-5p(1), mmu-miR-495-3p(1), mmu-miR-191-5p(1), mmu-miR-125a-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-212-3p(1), mmu-miR-425-5p(1), mmu-miR-499-5p(1), mmu-miR-802-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-532-5p(1), mmu-miR-188-3p(1), mmu-miR-1904(1), mmu-miR-202-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTTTTATTTCGAGTAAGCTTTTGTT
siRNA sets
AAAAGCTTACTCGAAATAA, AAAGCTTACTCGAAATAAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.66260554
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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