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mmu_ciPrkar1a_63
Basic information of circular RNA
PanCircBase ID:
mmu_ciPrkar1a_63
mm39_Chr. Position ID:
chr11|109541450|109541513|+
Gene name:
Prkar1a
Transcript:
ENSMUST00000106677.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
63
Exon/intron sizes in nt:
63
Flanking exon/introns:
chr11:109541450-109544604
Splice length:
63
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGAAGGGACAATAAAGGAGACAGAAACGGGTTAGCAGAAAGAGAAGGAAAAAGATGAGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGTTAGCAGAAAGAGAAGGAA
55.24
TTCTGTCTCCTTTATTGTCCCTTCC
60.28
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTTAGCAGAAAGAGAAGGAAA
56.01
TTCTGTCTCCTTTATTGTCCCTTCC
60.28
60
PCR template sequence:
GGTTAGCAGAAAGAGAAGGAAAAAGATGAGAGTAAGGAAGGGACAATAAAGGAGACAGAAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GAAAAAGATGAGAGTAAGGAAGGGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.242157734
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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