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mmu_ciPpp1r10_153
Basic information of circular RNA
PanCircBase ID:
mmu_ciPpp1r10_153
mm39_Chr. Position ID:
chr17|36240478|36240631|+
Gene name:
Ppp1r10
Transcript:
ENSMUST00000087211.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
153
Exon/intron sizes in nt:
153
Flanking exon/introns:
chr17:36240478-36240664
Splice length:
153
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACGTGACACTCCCCACATTCTCTTCAGTCTTGTTGGATTTCAATTTTGTGAGAGAGGCTCACTGTGTAGCCCAGGCTGGCCAGGGACATCCTGCACCCTGTGCCTGGCTTATCCCAGTTCCTGTCTTGCATTTACATGCTAAGTTGTTGCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACCCTGTGCCTGGCTTATC
60.75
GCTACACAGTGAGCCTCTCTC
59.87
130
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACCCTGTGCCTGGCTTATC
60.75
GCTACACAGTGAGCCTCTCT
58.82
130
PCR template sequence:
CTGGCCAGGGACATCCTGCACCCTGTGCCTGGCTTATCCCAGTTCCTGTCTTGCATTTACATGCTAAGTTGTTGCTGTACGTGACACTCCCCACATTCTCTTCAGTCTTGTTGGATTTCAATTTTGTGAGAGAGGCTCACTGTGTAGCCCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-128-3p(1), mmu-miR-433-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTAAGTTGTTGCTGTACGTGACACTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.810817838
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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