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mmu_ciPlpp5_232
Basic information of circular RNA
PanCircBase ID:
mmu_ciPlpp5_232
mm39_Chr. Position ID:
chr8|26211264|26211496|+
Gene name:
Plpp5
Transcript:
ENSMUST00000068916.16
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
232
Exon/intron sizes in nt:
232
Flanking exon/introns:
chr8:26211264-26211688
Splice length:
232
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGAGAAGCCTTGGCACTCAAACCTCCCTGAGCGCCCCCCACACACACACCACCACATTCTCAAGCAGTGTTTACCCGGATTCTCAGACTAGTCTCTCCTTTCTCACCAGAACTCCCTCTCCCTGCCCTCTGCCTGTTCCAAGTGTACCACCTGGTCTGCGTCCTGTCCTGAGTATTTCCCACAGCGACCACCTTTATGTACCTAAAGCTGCAGTATGACTAGCTGCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGCGTCCTGTCCTGAGTA
59.96
TCCGGGTAAACACTGCTTGA
59.24
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGCGTCCTGTCCTGAGTA
59.96
TGCTTGAGAATGTGGTGGTGT
60.13
144
PCR template sequence:
TCTGCCTGTTCCAAGTGTACCACCTGGTCTGCGTCCTGTCCTGAGTATTTCCCACAGCGACCACCTTTATGTACCTAAAGCTGCAGTATGACTAGCTGCTGTAAGTGAGAAGCCTTGGCACTCAAACCTCCCTGAGCGCCCCCCACACACACACCACCACATTCTCAAGCAGTGTTTACCCGGATTCTCAGACTAGTCTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGACTAGCTGCTGTAAGTGAGAAGC
siRNA sets
TCACTTACAGCAGCTAGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.787044912
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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