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mmu_ciPlpp5_232

Basic information of circular RNA
PanCircBase ID:

mmu_ciPlpp5_232

mm39_Chr. Position ID:

chr8|26211264|26211496|+

Gene name:

Plpp5

Transcript:

ENSMUST00000068916.16

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

4

Exon/intron offsets:

0

Genomic length:

232

Exon/intron sizes in nt:

232

Flanking exon/introns:

chr8:26211264-26211688

Splice length:

232

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTAAGTGAGAAGCCTTGGCACTCAAACCTCCCTGAGCGCCCCCCACACACACACCACCACATTCTCAAGCAGTGTTTACCCGGATTCTCAGACTAGTCTCTCCTTTCTCACCAGAACTCCCTCTCCCTGCCCTCTGCCTGTTCCAAGTGTACCACCTGGTCTGCGTCCTGTCCTGAGTATTTCCCACAGCGACCACCTTTATGTACCTAAAGCTGCAGTATGACTAGCTGCT

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TCTGCGTCCTGTCCTGAGTA

59.96

TCCGGGTAAACACTGCTTGA

59.24

157

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TCTGCGTCCTGTCCTGAGTA

59.96

TGCTTGAGAATGTGGTGGTGT

60.13

144

PCR template sequence:

TCTGCCTGTTCCAAGTGTACCACCTGGTCTGCGTCCTGTCCTGAGTATTTCCCACAGCGACCACCTTTATGTACCTAAAGCTGCAGTATGACTAGCTGCTGTAAGTGAGAAGCCTTGGCACTCAAACCTCCCTGAGCGCCCCCCACACACACACCACCACATTCTCAAGCAGTGTTTACCCGGATTCTCAGACTAGTCTC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

7

Interacting miRNAs (#binding sites)

mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-574-5p(1)

siRNAs for circular RNA silencing
Junction sequence

ATGACTAGCTGCTGTAAGTGAGAAGC

siRNA sets

TCACTTACAGCAGCTAGTC

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.787044912

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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