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mmu_ciPcyt2_120
Basic information of circular RNA
PanCircBase ID:
mmu_ciPcyt2_120
mm39_Chr. Position ID:
chr11|120501818|120501938|-
Gene name:
Pcyt2
Transcript:
ENSMUST00000026129.16
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
12
Exon/intron offsets:
0
Genomic length:
120
Exon/intron sizes in nt:
120
Flanking exon/introns:
chr11:120501790-120501938
Splice length:
120
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGGTTGCCCGGCGTGGGCTGCCTCGGGGAAGTAGGTGCAACCATCCTTCCTGGTATTGGTCTCCCATGGGTGGAGGGACAGCTGGGGGTGTCTCTGTGGTCAGGAGACCTCTCATCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
GTCTCCCATGGGTGGAGGGACAGCTGGGGGTGTCTCTGTGGTCAGGAGACCTCTCATCTCGTGGGTTGCCCGGCGTGGGCTGCCTCGGGGAAGTAGGTGCAACCATCCTTCCTGGTATTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GACCTCTCATCTCGTGGGTTGCCCGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIPCYT2_120_ORF_1
0.8973
-0.056139219
0.070724796
171
ORF sequence:
ATGGGTGGAGGGACAGCTGGGGGTGTCTCTGTGGTCAGGAGACCTCTCATCTCGTGGGTTGCCCGGCGTGGGCTGCCTCGGGGAAGTAGGTGCAACCATCCTTCCTGGTATTGGTCTCCCATGGGTGGAGGGACAGCTGGGGGTGTCTCTGTGGTCAGGAGACCTCTCATC
Peptide sequence:
MGGGTAGGVSVVRRPLISWVARRGLPRGSRCNHPSWYWSPMGGGTAGGVSVVRRPLI
IRESfinder result
IRESfinder score
0.581851835
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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