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mmu_ciPctp_508
Basic information of circular RNA
PanCircBase ID:
mmu_ciPctp_508
mm39_Chr. Position ID:
chr11|89893019|89893527|-
Gene name:
Pctp
Transcript:
ENSMUST00000020864.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
508
Exon/intron sizes in nt:
508
Flanking exon/introns:
chr11:89882014-89893527
Splice length:
508
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGCAACTGACCTGCCCGCTGGAGGAGGTCAGGGGCCTGGGCCCCCTGGTTAGGACTCGCCAAGGGTACTCCACTGCTCTGCAGGGGTGACTAGGCTCCTTGGAGCTACTTTACCCTGTGTAGATCTTATGCGGCTGGCAGGTTGTCCGAGCTCAGCCTCAGGTCATTCCTGTTGCTAGACTTCTGAGTTGTAATTTATGTTTTACTCTGCAGCGTTTGCAAAAAAAATCAAACGGCCTGGGAGTAGGGAATTGTATTTAACGGCTCGTGGTTGAAGATGGGGCGAGGTGCCAAAGAAACCCACCCGGTCTAGGATCTGGACTTTCACTGGGAGTGGGTATAACGGGTCCAATACAGGGTTTCCGAGATCGAGCTGGAGTGGCGTGCCCGTGGACATATAGGAGTGTGTGTTTATCTACATTCACAAGAGAGAGGCATTTGGCAGCAATCAGCTGATAGAAAACAGAAAATGAGTAGTTTGGAAGTTTAGCCCAACTTCAGTCCGTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACAAGAGAGAGGCATTTGGC
59.53
CTTGGCGAGTCCTAACCAGG
60.11
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACAAGAGAGAGGCATTTGGC
59.53
CCTTGGCGAGTCCTAACCAG
60.11
151
PCR template sequence:
GTGTTTATCTACATTCACAAGAGAGAGGCATTTGGCAGCAATCAGCTGATAGAAAACAGAAAATGAGTAGTTTGGAAGTTTAGCCCAACTTCAGTCCGTTGTAGCAACTGACCTGCCCGCTGGAGGAGGTCAGGGGCCTGGGCCCCCTGGTTAGGACTCGCCAAGGGTACTCCACTGCTCTGCAGGGGTGACTAGGCTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-96-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACTTCAGTCCGTTGTAGCAACTGACC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.664357748
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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