top of page
mmu_ciPcmtd2_84
Basic information of circular RNA
PanCircBase ID:
mmu_ciPcmtd2_84
mm39_Chr. Position ID:
chr2|181492811|181492895|+
Gene name:
Pcmtd2
Transcript:
ENSMUST00000145475.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
84
Exon/intron sizes in nt:
84
Flanking exon/introns:
chr2:181492811-181493374
Splice length:
84
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATCTAGTATGACACATTGATGTTGATGAAAATTACAGCAACAAGGTTTTAGCGTCTGGCATTTGGGCCTCTCTTGTCCTCTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGGCCTCTCTTGTCCTCT
60.18
TGCTGTAATTTTCATCAACATCA
55.14
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGGCCTCTCTTGTCCTCT
60.18
TGCTGTAATTTTCATCAACATCAATGT
58.91
62
PCR template sequence:
CAAGGTTTTAGCGTCTGGCATTTGGGCCTCTCTTGTCCTCTAGTATCTAGTATGACACATTGATGTTGATGAAAATTACAGCAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CTCTTGTCCTCTAGTATCTAGTATGA
siRNA sets
ATACTAGATACTAGAGGAC, TCATACTAGATACTAGAGG, AGATACTAGAGGACAAGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.619432208
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page