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mmu_ciParp12_222
Basic information of circular RNA
PanCircBase ID:
mmu_ciParp12_222
mm39_Chr. Position ID:
chr6|39070339|39070561|-
Gene name:
Parp12
Transcript:
ENSMUST00000038398.7
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
222
Exon/intron sizes in nt:
222
Flanking exon/introns:
chr6:39068314-39070561
Splice length:
222
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGACATTTGTGCGCTGGCTTGGTATGTGGTTTTAGTTGAGGAGTGCTTTGCTTTCAGTTACAGGAAGCTTCTCAGACTGCATGGAAGGGTACTGACTAGCATGTGTGACTAGCATGCTACTGTCTTTCAAACCTACTAGTTGGGAAAGTCTTTAAGCCACAGTGAGAATTAGCATTGTGGGTTTCATCAAGGCTATTTAGTGAGATGTGCAAACCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CATTGTGGGTTTCATCAAGGCT
59.44
ACCCTTCCATGCAGTCTGAG
59.38
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCATTGTGGGTTTCATCAAGG
59.44
ACCCTTCCATGCAGTCTGAG
59.38
142
PCR template sequence:
TACTGTCTTTCAAACCTACTAGTTGGGAAAGTCTTTAAGCCACAGTGAGAATTAGCATTGTGGGTTTCATCAAGGCTATTTAGTGAGATGTGCAAACCTGGTAAGTGACATTTGTGCGCTGGCTTGGTATGTGGTTTTAGTTGAGGAGTGCTTTGCTTTCAGTTACAGGAAGCTTCTCAGACTGCATGGAAGGGTACTGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1), mmu-miR-32-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGTGCAAACCTGGTAAGTGACATTT
siRNA sets
AAATGTCACTTACCAGGTT, TCACTTACCAGGTTTGCAC, ATGTCACTTACCAGGTTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.867259201
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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