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mmu_ciP3h2_1099
Basic information of circular RNA
PanCircBase ID:
mmu_ciP3h2_1099
mm39_Chr. Position ID:
chr16|25787554|25788653|-
Gene name:
P3h2
Transcript:
ENSMUST00000039990.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
12
Exon/intron offsets:
0
Genomic length:
1099
Exon/intron sizes in nt:
1099
Flanking exon/introns:
chr16:25787554-25788653
Splice length:
1099
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGATGCCCCTACTCAACCCTCGGTGGGAAGAGGGAAGTGGGAAGATGCTCTGCTTGCTTCCTCGTTCATTTCTGTGAAGCAGAGTCCTCCAGGAATCACCTGGAGCCTTCTCCTTTTTATCTTAAGCATCATGCACATTTTCCCTCCTTTTCCTTAGACCAACTGCTCTCTAAATCACTTTGTTTCACTAAGGCATAGCATTTTGCATGTGTTTCCCACTCGGAGAGCACACAGGCATGGTCCCTTAACATACATAACATATTATCACATGCATGTGTATTATTCACACCAAGAACCGTGTCTACATTTTTCCATTATGAAAACAGAAACGTTGGGAAATAACTCAGGTTTCTTTAAGGGGTTGGCCACTGAGAGTTTGACCAATGAGTAGTATATGGTCAACACTAAATTGTTTTTTGTTTTTCTTCTTTTTTGGGGGGATAGGTCAAAAGGTTAGAGATGGGAAGACCTGGAAGGTCAGGGTACATGGTGTGAAATTCACAGGTATTCAATAAAAATATTGTGTTGGGAAAAGTAAAAGAAAATAGAAACTCACAAGGGAATACTGTTGTATAGTTTGAGGAGATATGTTAGTACACAAAGAAGATATCCTAGCATGAAACAGTGCATCTTAATATGTAGTGACTATTAATACTTAACAACATGGCAGTTGCTATGTTGTATTTTATTCAAAACATTTAGTGTGCAGTCCTTATCTGAGTGACCATGCTAGATCACAAGGAATTCATTGCCTAAGCTAAGGAAAGAAAGCCCATCCCCCAAGGTTCCTTTTATATCTGGGAAAACGAGGGTTATAAGCAATGTGGCTGGATTTAGAAGCTATCTGAAATCAAGCCTGACTAACTGTTGACAATGTCAAATGAGCATTGAAACAAGGCCAAAACCATATGGAAACGGAACCAATAAGCATCCAGAGTATAAGCCAGACACCCCTGAGCTTAATTTCAAGGGTTGGGGGGACCAACATCAAAGGTAACTCCCCATTCAGGTGGCTCCCTTCACTGGTCGTCTGTATTTTACTATGAGGCTGCTGAGGACTGTATTGTCACTGACTGCCCCACCCCCTCCTTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTCCCTTCACTGGTCGTCTG
59.76
TCCTGGAGGACTCTGCTTCA
59.88
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGGCTGCTGAGGACTGTA
60.25
TCCTGGAGGACTCTGCTTCA
59.88
150
PCR template sequence:
AACTCCCCATTCAGGTGGCTCCCTTCACTGGTCGTCTGTATTTTACTATGAGGCTGCTGAGGACTGTATTGTCACTGACTGCCCCACCCCCTCCTTGCAGGTAAGGATGCCCCTACTCAACCCTCGGTGGGAAGAGGGAAGTGGGAAGATGCTCTGCTTGCTTCCTCGTTCATTTCTGTGAAGCAGAGTCCTCCAGGAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-150-5p(1), mmu-miR-325-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-369-3p(1), mmu-miR-532-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCCCTCCTTGCAGGTAAGGATGCCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.799961751
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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