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mmu_ciOgfr_464
Basic information of circular RNA
PanCircBase ID:
mmu_ciOgfr_464
mm39_Chr. Position ID:
chr2|180235511|180235975|+
Gene name:
Ogfr
Transcript:
ENSMUST00000029087.4
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
464
Exon/intron sizes in nt:
464
Flanking exon/introns:
chr2:180235511-180236000
Splice length:
464
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGACAAGACCTGCTGTCACCCTCCCGTCCCTGTTGCTTCCCTTTAGTATCTGGGGCTGGGTTTTAAGCAGAGAGGTCAAATGCAGGCTCTGATGCTTGCTTCGCCCAGAGTGTAGTGCTCTCTGTGGCAGGTGGCTCAGGATAGAGGTGTTGTAGAAATTGTGGGGTGATGGACAAAGCAGTTCCTTGGCTTGGGAGTGTTTAATCCCTTCCATCCACCCAGAAAGCTAGGCAAGGGAGGCCTCCAGATGGCATAGTCACTCTGGGTCAGCCCTTCCTAGCTTTCAGCAATGTTTCCCAGACAGGAGTCCATGGACTGGGCCATCTCCCAGGACTTGCAGATCCTGTCCACAGGTCAAGGGTACCCAGGTCATTTCCCTAGGTGGGGACCTGAGAAGACTCTAGAACTTTGAGATGGACTTGACTGGGGATGCCTTGGCCAGATAGGGCAGGGTCCACCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATGGACTTGACTGGGGATGC
59.74
TCAGAGCCTGCATTTGACCT
59.31
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACTTGACTGGGGATGCCTT
59.67
TCAGAGCCTGCATTTGACCT
59.31
140
PCR template sequence:
GTACCCAGGTCATTTCCCTAGGTGGGGACCTGAGAAGACTCTAGAACTTTGAGATGGACTTGACTGGGGATGCCTTGGCCAGATAGGGCAGGGTCCACCCGTAAGGACAAGACCTGCTGTCACCCTCCCGTCCCTGTTGCTTCCCTTTAGTATCTGGGGCTGGGTTTTAAGCAGAGAGGTCAAATGCAGGCTCTGATGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-150-5p(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCAGGGTCCACCCGTAAGGACAAGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIOGFR_464_ORF_3
1.0331
-0.128514754
0.036106438
81
ORF sequence:
ATGCCTTGGCCAGATAGGGCAGGGTCCACCCGTAAGGACAAGACCTGCTGTCACCCTCCCGTCCCTGTTGCTTCCCTTTAG
Peptide sequence:
MPWPDRAGSTRKDKTCCHPPVPVASL
IRESfinder result
IRESfinder score
0.679120115
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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