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mmu_ciOciad1_2868
Basic information of circular RNA
PanCircBase ID:
mmu_ciOciad1_2868
mm39_Chr. Position ID:
chr5|73458060|73460928|+
Gene name:
Ociad1
Transcript:
ENSMUST00000071081.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
2868
Exon/intron sizes in nt:
2868
Flanking exon/introns:
chr5:73458060-73460934
Splice length:
2868
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGTTCACATTCACACTTTGGATATCTGCCTTTATCTTATTTTCCTGATTCTTAGATAAGAAAATAGGATCTTACTCAATACAGGATCACTGATCAATTTATACAGTGTTAGAATAACTATCTAGACCCACTCAGGGGATTCTATTGATTTGATATTTTGATGTCATTGAGCATGTGTTTTAATTGTTACAGTGCCTGCCTATGTGCAGGAAGCCCTGAGTTTGAACCCTGGTACTGTGTAAAAGAACTGAGTGTGCTTGCACACGTCTGTAATCCCAGCGCTTGGGGAGTAGAAGCAGGAGGATCAGAAGTTCAAGGCCATCCTGGGTTACTTGAGACCCTGCCTCAAAAACAAAAACCCCAACCAACCAAATAGAGAATTTGGTATCAGTAACAATCTATAAGAGCAGAAAAGTACCTTAACATTTGTTGCTAGGTCTGGAGGGATGGTTCAGTGGTTAAGAGCATTTGATATTCTTCCAGAGGACCCGAGTTTAGTTCCTGTTCCCACTTCAGCTTCTCACACAGGCATACATTAAAAACCAACCAACCAACCCTTGTGGCTGGCTAGTTTGCAAGGAGAACAACAACAAACCTGGGCTAACTGAACACTGGCATCTTAGAGATTGTTAGAAATATAGTTTATGGGTCCATACTAAGCATACTGAGTCAATATTGCAGTCTGTTTTACACATTTAAGGTTTTTCATATGCACTGGCTTAAAGACCTATAGTTCCCTATTCTGGCTTTGTCTTCTCATTTTGGGGCATGGGTAAGGATGAGTTGGCATTCAAAAAATACTTAGAAGGCCTGGAGAGATGGCTTAGCAGTGAAGAGTGCTCATGTTATTGCAGAGGATTCAAGTTTGATTCCAAGTACCCATGTGGTAGTTATCTTATTTCGAGTTAAGAAGAAAACGTTTAATTGGGGCTGGCTTACAGTTTCAGAGCTTTAGTCCTTTATTGTCATGGCAAGAAGCATGACAGCATGCAGGCAGACGAGGTGCAGGAGAAGGAGCTGAGAGTTCTACATCTGGATCTTTAGCAGGAGGAGGCTGTGTGCCACATTATTAGGCCTAGATTGAGCACATAAGACCTCTAAGCCTGAAGTGACACACTTCCTCCAACAAGGTCACGCTCCTAATAGTGCCACGACCTATAGGCTAAGCATTCAAACTCAGGAAGCTAGGGAGCCATTCTTATTCAAACCAACACAGTGGTTGACAGTTATTTGTAACTACAGTTCTAGAACCCAATAGGCCAAGAACCCAATCTTTAAAATAATTTAGAAATTTAGGAGTCTGGCTAATAATACGGTTTTACTTATCTGTGTATACATGTGAGTGTGGTCTTGTTTGTCATTATCAAACATCTCCACAGGTTATCTCCCTGCCCCAGAATTCAAGGAGGTAGACTAGGCAGGCCAGCAAGGCCCAGTTCTGGGGTTATTATGTACACTTTACCAACTGAGCTATGTCCCTAGCCGATGGTAATCTTTTTAATATTCCCCAAAGGAACTAACTTGTTAGCTTAAGTAGTGCAGTGTATATCTCTGAGATTCAGTGTAGGTTAAGGATTAATGCCTTACTGGTGTGGTCAGCAGAGTTAGTTGCTTGTTAAATTTATTTTGTGAATTACCAGACTTTTGTAGCCTCTACCTACAACAGTATGGTATTCTTTGGAGTCCTGTTTTGGCTTTTTGTTTGTATCCTGTGCACATTTTTCATAAGAGGAGCTGGAAATTGAAGGCCTTGCTCTGTCACTGAGCTACATACACCCTACTCTAAGCTAGCAGTGCCATGGATTTTAGAGACAGTGCTTGCAGCTCCATCCCCTTGATTGACGCAGTGAGATGATTTGAAAGTGCAGAGGCTTACTGTTAAGCCTCCCATCGTGGGTTCTGTCCCCTGAGCCCACTTGTGGAGGAAAGAGCCACCTCCTGCAAGTTGTCTTCTGTCCCTGGGGTGCTGGCCAACCATACACACAAAGTACATACACGCACACAGTAAACAAGCAATCAGGTCTCCGTGGCTGTCTCTAGACCAGCATTGATGGACTACTTTTTTCTTTTAAATTAGAGCCCAGTTCGTGTGGTTGCTGTAAAGCCATGGTCTACTAGGATGAGAAGGTGGTCTCTTACACTTTTTTTATATTTAAAATTAAAAGCCACCTGGACTCAAGGCACATGTCACGGACCCTGCCCTGCTTTGAAAGGAGTGTGCTTGCTTACTGCACTGGTGTGTTTTCCTTAAAAGACAGTTAAGGTGTGAGTCCACCTCTGAGCTCTGGCTTTGTTCAGCGTCCTCCGACATTTATGGCTGTCTTAGTTACTCTTACTTTATAGTAGGTCTTAGTACCTGGTGATAGTTTATTATTTTTCAATGTTATCTTGGCTTTTTGTGTCAATATATGTTTTTTGGAATAAGCAAAATGTTTTTAAGTTGAACCTTGAGTTTGTAGGTGAGTTTTTGGAGAATTGTCTTCTTCGCAGTATTTAACATTTCTCCTATTGGGCATGGTGTATTTTGTCATATTCATTTTTCTCACTTTTAATGTGGAGCTGTTTTATATGTATGACTGCAGTGCTTTCCTGGATCTTGGATGATTTTAGCCCTATAATTAATCAGCTCTTTTCAGACTTTGTTGTTGCTCTTGTAGATAAAAATATTTACTCAGTCTCTTGACTGTGTCAAGTGGTCATTTTTTTATTTACCTAGTCTACTAGTCTATAGAGTTTAACATTTAGAAAAAATTCTGTTGACACTGAATTCACAAAAAGGAGTTACTGTTGGCACTTGCTGTTTTGCGGTAATTGAAACTTTTTTTCCCTTCTCTAACAACATTACTGAGAAATACTTAATTCTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCACTTGCTGTTTTGCGGTA
59.97
TGATCAGTGATCCTGTATTGAGT
56.8
174
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTTGGCACTTGCTGTTTTGC
59.35
TGATCAGTGATCCTGTATTGAGT
56.8
178
PCR template sequence:
GAATTCACAAAAAGGAGTTACTGTTGGCACTTGCTGTTTTGCGGTAATTGAAACTTTTTTTCCCTTCTCTAACAACATTACTGAGAAATACTTAATTCTTGTAAGTGTTCACATTCACACTTTGGATATCTGCCTTTATCTTATTTTCCTGATTCTTAGATAAGAAAATAGGATCTTACTCAATACAGGATCACTGATCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
32
Interacting miRNAs (#binding sites)
mmu-miR-148a-3p(2), mmu-miR-297a-5p(2), mmu-miR-210-3p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-106a-5p(1), mmu-miR-199a-5p(1), mmu-miR-200b-3p(1), mmu-miR-135a-5p(1), mmu-miR-200c-3p(1), mmu-miR-26a-5p(1), mmu-miR-122-5p(1), mmu-miR-335-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-24-3p(1), mmu-miR-434-3p(1), mmu-miR-26b-5p(1), mmu-miR-218-5p(1), mmu-miR-511-3p(1), mmu-miR-183-5p(1), mmu-miR-340-5p(1), mmu-miR-499-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-207(1), mmu-miR-532-5p(1), mmu-miR-452-3p(1), mmu-miR-1904(1), mmu-miR-296-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATACTTAATTCTTGTAAGTGTTCACA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.873797265
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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