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mmu_ciNup210_1745
Basic information of circular RNA
PanCircBase ID:
mmu_ciNup210_1745
mm39_Chr. Position ID:
chr6|91003962|91005707|-
Gene name:
Nup210
Transcript:
ENSMUST00000032179.14
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
31
Exon/intron offsets:
0
Genomic length:
1745
Exon/intron sizes in nt:
1745
Flanking exon/introns:
chr6:91003961-91005707
Splice length:
1745
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGACATAGGCATTTCTTGTTTCCCAAGAAGCTGGGCTTGTTGTATCTGGGTTTCATATATAGGTTCAGATGGGTGATGAAAGAAAGGCAAATGCTATGGAAGGACAATGGAAGGGATGGCATGCCACACCACACAGGCCAGGCCTGGAAGCAGCAAGTCCAGTCAAGAGGCAGAGGGAGTGAGGGGAAGAAAGGCCCAGGCCTTTGTCTGTATGTGGCAGGAACGTGTTACTTGATGTCGCTCCCTAATGGGCAGGAAGCAGAGCACACCTACAGAGAGACTGGAGGTTTTGTGGAAGGCTCTCCTTGTGACCAGGAAAGGAACGCGCAGGGAAATGTAGCGTCTGCAGAACAAGGAACATGGCCCACACTGCATGGACACATGAGAGAGAAGCCACACACTGAACATCTGTGTTACATCTTTCTGGTTCCTCCCTTAGCTCTGTTACAGAGGCCCAGAGCAGTCAAGCCATTTGCCCTGAGCTACCAGCTAGGAAGTAAGGTTTGAATTTAGCCAGCTCCAAGCATGATTTTCTTAGGCTGACTTAATCCCTGATGCAGCCTCGATCCTGGTGTGAGAAGGGAGAGGGTGACAGGAGGGCCCAGTCTTCAGTGTAGCCTGCCAAATGTTTGAGTCTGCTGGATAGCAGTGGCTCTCTGTGCACATCTCCCCTCTGACATCAGCATCCTCTGGGTAGTTAGAGATACATTTCTATAGAGGTCAGCACTCCATGATTTTAAAGGTCGGTGGCCGCTGCCCTAGGGCATTGCAGAGGTATGAGGGAGACACTTTGGCTGAGGCTGGGGCTTCTTGAACTATCCAGATGTTAGTTACCATTCCAACTTGGCTCAGAACCCTGAAGAACAGGGATAAGGACATTCATGGCAGGAGCCTGAGCAGGAAACCTAATCCTGTGATTTTGACAAGGTAGCTCATCTCCCCAAGGCACTCCCACCTCTCACACAAAGAATATACCTAACCCATCCATGGAAAGTTCTCATGAGGGTCTCTGTATAACTTCAGGGCACTACTCATAGTACCATCTGTCTGCCTTGGGGGAAGTAGAGCCCAGGTCTGGCCACCGTTAGCCATACCATAGAAGTCACTCAGGCCTAGCATGGCCAGAAGTACCTGTTCATAGCAACCATTTTGGAGTCAGCATGGAGGAGGTCTGAATGGAGTCAGACAACATGACCCTCACTCCTACCTGCTCTATGCTCCCCTCTGGCATCCCTCACAATGAGGGTCTCGCAGGTGTGTTAGGAGTGCCTTCCCACTACCAGCCTTGTTTGATCCCTACAACAGTTGCACCATATCCGTCCTTGCTCCTGCTTGACAGGACCAGACAGACAGCACAGCAGTGCTTGGGCCAGCCACATGGTGAAAGGCAGCCTGCACCTTTTTGGCATGTCCTCTGTGGGTCATTTTCTTCCTTGGGCCTCTGCTTCCCTCTTGAGTGTGAGCAAGATGATGTTGGCAGATCCGTGCTGAGTGCTGAGGGTTGTGTCTCAAGAAGTGTCAAGTCTGTGTTCCTAGACAGACAGACAGACAGACAGATGGTACTATGAGTAGTTCCCTGCAGTTATACAGAGACCCTCGTGAGAACTCCCCATGGATGGGTTAGCCACATCTGGGACCACAGTTAGCCTCAATGTTGCTCAGTAGGTGATAGGGCTGCATACTTTTTCTGTTTCCCCTCTGCCTTCTTTACTGAGCTTCAGCCCGCCTTTCCCCTGTCCCTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTCAGTAGGTGATAGGGCT
60.06
ACCCAGATACAACAAGCCCAG
60
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTCAGTAGGTGATAGGGCT
60.06
ACCCAGATACAACAAGCCCA
58.93
141
PCR template sequence:
TTAGCCTCAATGTTGCTCAGTAGGTGATAGGGCTGCATACTTTTTCTGTTTCCCCTCTGCCTTCTTTACTGAGCTTCAGCCCGCCTTTCCCCTGTCCCTAGTAGGACATAGGCATTTCTTGTTTCCCAAGAAGCTGGGCTTGTTGTATCTGGGTTTCATATATAGGTTCAGATGGGTGATGAAAGAAAGGCAAATGCTAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-221-3p(2), mmu-miR-222-3p(2), mmu-miR-146a-5p(1), mmu-miR-217-5p(1), mmu-miR-326-3p(1), mmu-miR-214-3p(1), mmu-miR-127-5p(1), mmu-miR-411-3p(1), mmu-miR-705(1), mmu-miR-342-3p(1), mmu-miR-207(1), mmu-miR-452-3p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCCCTGTCCCTAGTAGGACATAGGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.665867405
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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