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mmu_ciNup153_371
Basic information of circular RNA
PanCircBase ID:
mmu_ciNup153_371
mm39_Chr. Position ID:
chr13|46858273|46858644|-
Gene name:
Nup153
Transcript:
ENSMUST00000021803.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
371
Exon/intron sizes in nt:
371
Flanking exon/introns:
chr13:46858242-46858644
Splice length:
371
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAATGATATCTCATATGCTGCAACTGGATGTTTTTATATTTAGTTTGTAAGGTCCATATTTATAATGGCCTTGAAGATGAAGAAAATTAAAAGTATATTTATGTTGTTAGTGAGATGGCTCAGCATGTCTAGGTACTTTCTACCAAACCTGAAAACCTGTGTTTAATAACTAGAACACACATAGTGGTAAGAGAAAATTGACTGCCAAGAGCTTTCCCGTTAACCTTCACAAGCTGTCCGTGGCAAGACCATGTGTGCTTACGTGCCCGTGGATGTATAGATACATAAATGTAGAAAAAAATCTAAAGTATATTTGGCTGTACCCTGATTGTTTTAATATTTATTTAACAGTTTCTGGGACAAAATAATA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGTACCCTGATTGTTT
57.03
TTTTCTTCATCTTCAAGGCCA
55.68
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGCTGTACCCTGATTGTT
57.03
TTTTCTTCATCTTCAAGGCCA
55.68
144
PCR template sequence:
GGATGTATAGATACATAAATGTAGAAAAAAATCTAAAGTATATTTGGCTGTACCCTGATTGTTTTAATATTTATTTAACAGTTTCTGGGACAAAATAATAGTAATGATATCTCATATGCTGCAACTGGATGTTTTTATATTTAGTTTGTAAGGTCCATATTTATAATGGCCTTGAAGATGAAGAAAATTAAAAGTATATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-1187(1)
siRNAs for circular RNA silencing
Junction sequence
GGACAAAATAATAGTAATGATATCTC
siRNA sets
CATTACTATTATTTTGTCC, TATCATTACTATTATTTTG, ATCATTACTATTATTTTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.829212134
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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