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mmu_ciNop58_57
Basic information of circular RNA
PanCircBase ID:
mmu_ciNop58_57
mm39_Chr. Position ID:
chr1|59748234|59748291|+
Gene name:
Nop58
Transcript:
ENSMUST00000188390.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
57
Exon/intron sizes in nt:
57
Flanking exon/introns:
chr1:59748234-59749712
Splice length:
57
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGATAAAGAGGATGAAATTACTGAAAAGAAAGCAAAAAAAGCCAAGATTAAAATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
GAAAGCAAAAAAAGCCAAGATTAAAATTGTAGATAAAGAGGATGAAATTACTGAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CAAGATTAAAATTGTAGATAAAGAGG
siRNA sets
TTTATCTACAATTTTAATC, TTATCTACAATTTTAATCT, ATCTACAATTTTAATCTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.335575901
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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