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mmu_ciNdufs2_75
Basic information of circular RNA
PanCircBase ID:
mmu_ciNdufs2_75
mm39_Chr. Position ID:
chr1|171064963|171065038|-
Gene name:
Ndufs2
Transcript:
ENSMUST00000150108.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
75
Exon/intron sizes in nt:
75
Flanking exon/introns:
chr1:171064838-171065038
Splice length:
75
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGATTTGGAGAAGGACTTACCAGTAGAATCCAGGCACTTCGGGATGTGTATGGGCAACCATGCCAAGCAGAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGATGTGTATGGGCAAC
60.11
GCCTGGATTCTACTGGTAAGTCC
60.18
72
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGATGTGTATGGGCAAC
60.11
TGCCTGGATTCTACTGGTAAGT
58.55
73
PCR template sequence:
TTCGGGATGTGTATGGGCAACCATGCCAAGCAGAGAGGTGATTTGGAGAAGGACTTACCAGTAGAATCCAGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GCCAAGCAGAGAGGTGATTTGGAGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CINDUFS2_75_ORF_1
0.7806
0.262138061
0.122869298
105
ORF sequence:
ATGTGTATGGGCAACCATGCCAAGCAGAGAGGTGATTTGGAGAAGGACTTACCAGTAGAATCCAGGCACTTCGGGATGTGTATGGGCAACCATGCCAAGCAGAGA
Peptide sequence:
MCMGNHAKQRGDLEKDLPVESRHFGMCMGNHAKQR
IRESfinder result
IRESfinder score
0.174600911
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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