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mmu_ciNat10_340
Basic information of circular RNA
PanCircBase ID:
mmu_ciNat10_340
mm39_Chr. Position ID:
chr2|103564870|103565210|-
Gene name:
Nat10
Transcript:
ENSMUST00000028608.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
13
Exon/intron offsets:
0
Genomic length:
340
Exon/intron sizes in nt:
340
Flanking exon/introns:
chr2:103564870-103565210
Splice length:
340
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACCGAGCAGGCCTCTGACCGTCCTGCCCAGGACCTCATGCAGTACTGAAGCTTGATGCTGTCTGAGAGTCCTAGGAGGTGACAACAATCCTGAGAGGCCAGTGGAAACATGGCTTGGGTCTTTGGATCCCTGGAGCCTTTTTGGTCCTTACTCTAAAACATGGGTAGGGTATGTTGACTTGGTAAATATTCAACCCAAAACACGTTAAATCACCCCCTTGACATTCTTGAGCCACAGATATTTGGACATCATGTCACAGATAAAGTGCAGGATTTCTATTGTTGTTAGATGCTGAGTGTTGAGGAATTGTTTCTAATCGTGTGTGTTGTGGCTGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGAGTGTTGAGGAATTGT
57.79
GCCTCTCAGGATTGTTGTCAC
58.92
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACATCATGTCACAGATAAAGTGCA
58.75
GTACTGCATGAGGTCCTGGG
59.82
140
PCR template sequence:
TATTTGGACATCATGTCACAGATAAAGTGCAGGATTTCTATTGTTGTTAGATGCTGAGTGTTGAGGAATTGTTTCTAATCGTGTGTGTTGTGGCTGACAGGTACCGAGCAGGCCTCTGACCGTCCTGCCCAGGACCTCATGCAGTACTGAAGCTTGATGCTGTCTGAGAGTCCTAGGAGGTGACAACAATCCTGAGAGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-217-5p(1), mmu-miR-540-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGTGGCTGACAGGTACCGAGCAGGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.702821376
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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