top of page
mmu_ciMyo9b_128
Basic information of circular RNA
PanCircBase ID:
mmu_ciMyo9b_128
mm39_Chr. Position ID:
chr8|71807199|71807327|+
Gene name:
Myo9b
Transcript:
ENSMUST00000212935.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
30
Exon/intron offsets:
0
Genomic length:
128
Exon/intron sizes in nt:
128
Flanking exon/introns:
chr8:71807199-71807359
Splice length:
128
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTAGTTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTGCATCTTGGAGCCATGGAAAGGAGCTGCTGTTGAGACAGCAGGGTGAGGAAATGGGCAGCCCCTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGAGCCATGGAAAGGAGC
60.32
GCAAGTACACACACACACACA
59.26
125
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTTGGAGCCATGGAAAGGAG
59.72
CACACACACACACACACACA
59.13
120
PCR template sequence:
ATCTTGGAGCCATGGAAAGGAGCTGCTGTTGAGACAGCAGGGTGAGGAAATGGGCAGCCCCTCAGTGAGTAGTTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(1), mmu-miR-300-3p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGGCAGCCCCTCAGTGAGTAGTTGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIMYO9B_128_ORF_1
0.673
-0.357051941
0.009411329
111
ORF sequence:
ATGGGCAGCCCCTCAGTGAGTAGTTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTGCATCTTGGAGCCATGGAAAGGAGCTGCTGTTGA
Peptide sequence:
MGSPSVSSCVRACVRVCVCVCVCVYLHLGAMERSCC
IRESfinder result
IRESfinder score
0.514849662
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page