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mmu_ciMorc3_657
Basic information of circular RNA
PanCircBase ID:
mmu_ciMorc3_657
mm39_Chr. Position ID:
chr16|93657485|93658142|+
Gene name:
Morc3
Transcript:
ENSMUST00000044068.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
657
Exon/intron sizes in nt:
657
Flanking exon/introns:
chr16:93657485-93659301
Splice length:
657
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTACTGAGCACTGAATTTTGACATACCGTTAGAGATGATGGTGCTGCTGTGGCCTTCCACAAGCTCAATGTCATGCTAAAAAGTGAATCCACACACTCCAAATTAGTGAGTTGATGTTTGTTAATATCATTTATTTCATCTTGTTTTGTTTTTTATTTAATGTGTATGGGTGTTTGCCACTCTGCACTACCTGTGTGCCTGTTGCTTGCAGAAACTAGACAAGGGCATTGGGTGTCCTTGCACTATTGAAGAGGCAGCAGTAACCAAGGTGCTGGCCCTGTGCCTTTATAAACATGAAAAACTGCCAGCAAAAGTTAATTCAGAGATCTCAGGAAACCAGGGTTGTTAGCTTTACTTCTTGCATTGTAAACTTTGAGTTCATTAGAGGTTTTGTGTTAATAAGGCCTTGTTTATACAGAGCACCTCTTAAGTTTTACCCTGGGTCCACTGTTAAGCAAGCCTCTGAGGTGTAGTCCAGCTCTTGTTTTGTGTGGTTTGCAGGAAAGTCTCAGTAAGTTTTCTCTGGGTCTGAGCTTGAACTCCTGCCTTTGCCTCCCGAGTGCCTTGCCCATAACTGTTCTAAAACTGCACTGAGAACATTACTCAGGAGGGAAGAGAGACATAGCTCAGCCAAAAGGTGCTCTCTAGCAAGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGAGTGCCTTGCCCATAACT
60.39
ATTGAGCTTGTGGAAGGCCA
59.89
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGCCTTGCCCATAACTGT
59.59
ATTGAGCTTGTGGAAGGCCA
59.89
168
PCR template sequence:
TCCCGAGTGCCTTGCCCATAACTGTTCTAAAACTGCACTGAGAACATTACTCAGGAGGGAAGAGAGACATAGCTCAGCCAAAAGGTGCTCTCTAGCAAGTGTAAGTACTGAGCACTGAATTTTGACATACCGTTAGAGATGATGGTGCTGCTGTGGCCTTCCACAAGCTCAATGTCATGCTAAAAAGTGAATCCACACAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(2), mmu-miR-15a-5p(1), mmu-miR-19b-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-19a-3p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-30c-5p(1), mmu-miR-709(1), mmu-miR-495-3p(1), mmu-miR-214-3p(1), mmu-miR-30b-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-301b-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-300-3p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCTCTAGCAAGTGTAAGTACTGAGC
siRNA sets
GTACTTACACTTGCTAGAG, ACTTACACTTGCTAGAGAG, TACTTACACTTGCTAGAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.856433668
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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