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mmu_ciMllt10_740
Basic information of circular RNA
PanCircBase ID:
mmu_ciMllt10_740
mm39_Chr. Position ID:
chr2|18175109|18175849|+
Gene name:
Mllt10
Transcript:
ENSMUST00000028076.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
12
Exon/intron offsets:
0
Genomic length:
740
Exon/intron sizes in nt:
740
Flanking exon/introns:
chr2:18175109-18175853
Splice length:
740
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTGTCCAACTGGGTTAGTAACCTGGGCTTTCTGGTCTTAGTTCAGTACCTTTTCAGATGTATTAATGTGTATACCTTTGAAAGTCTAAGTTTTATTTTCCAAAATGCATTAGATTTTTATTATGAAGATTTTTTTTTTCTCTTACAAAGATGCCTTTATAGTCTGCATTTTCTTCTGTTTCGGATCTGTGTTACAGTCAAATATTGCAAATTTTAGCTATTACTGACTTTTTTTTTTTAAAAACTATGGTACTTATGTTTTAGAATTGTGACCCCTGCCCTTGGTGGCATGCTGTTTTCAGTATTTGGGTTCCATTTAGCCTTAATGTAAATATAATTTTTCGGTATTTATAAATTAGCTTTATGTGAAAATAAAAGTTGATAGGATTAGAAGGCATAATGAGATTTTATTTTATAACATTTGATTGTGCTTTAAGATTGTAGAGATATTATGTAGATGACGAGAGATGCTATGTTGATAGAATTTTTAAAGCAATTTTCAAAAATATATTAAACTAAAGAAAGTGTTACCATTGTGACAGTGCACCTAACATATTATATCAGTTACTAGGCCATGTGTTAGTAAATGAATGGCTAAAGCTTTTAGTTTTAATAATTCAAGCAGTAGATCTGGTAGACATACTGAAATTTTGTTAAGCTGATTCAGTCTGTGCCTATGTTTTTCTTTTGTGTGTTTGAGAATGATCTTAACCTGACGTCCTTTTTTCCTTACTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTGATTCAGTCTGTGCCT
59.02
TGAAAAGGTACTGAACTAAGACCAGA
59.67
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTGATTCAGTCTGTGCCT
59.02
TCTGAAAAGGTACTGAACTAAGACCA
59.67
142
PCR template sequence:
GACATACTGAAATTTTGTTAAGCTGATTCAGTCTGTGCCTATGTTTTTCTTTTGTGTGTTTGAGAATGATCTTAACCTGACGTCCTTTTTTCCTTACTCAGTAAGTTGTCCAACTGGGTTAGTAACCTGGGCTTTCTGGTCTTAGTTCAGTACCTTTTCAGATGTATTAATGTGTATACCTTTGAAAGTCTAAGTTTTAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TTTTCCTTACTCAGTAAGTTGTCCAA
siRNA sets
TTGGACAACTTACTGAGTA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIMLLT10_740_ORF_2
0.4823
-0.416172603
0.004846462
105
ORF sequence:
ATGTTTTTCTTTTGTGTGTTTGAGAATGATCTTAACCTGACGTCCTTTTTTCCTTACTCAGTAAGTTGTCCAACTGGGTTAGTAACCTGGGCTTTCTGGTCTTAG
Peptide sequence:
MFFFCVFENDLNLTSFFPYSVSCPTGLVTWAFWS
IRESfinder result
IRESfinder score
0.922104737
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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