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mmu_ciMicu3_9292
Basic information of circular RNA
PanCircBase ID:
mmu_ciMicu3_9292
mm39_Chr. Position ID:
chr8|40819285|40828577|+
Gene name:
Micu3
Transcript:
ENSMUST00000068999.14
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
9292
Exon/intron sizes in nt:
9292
Flanking exon/introns:
chr8:40819285-40828577
Splice length:
9292
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACAGTGAACCAGCCGTGCGGTCCTCGTACTCCTGTCGTTTGTTAATCTGATCTTCACTTGGTTTTAGAGTCACAAGAAGAAGCCCAAATGTAGTATTTTTCTATTTCTTTTAGCTTTTTTTAGTATAAAAGGAGTGTGGTGGCGGCTCAGCACTAAAGGCAGTATCTGTGTGCCCTCATTGCAGTGCCCCTGCAGCCGCCCATTCTGAAGGCCTTTTGTTTTCAGATAGATATAGATTCAATTTCAATAACAAATACATAAGGGTATGCCATGTTACAACCCTTTTTTCAATTGCCATTGAAAAGTTTTTGCCATCTAAGTCAACTCTTTAAACTTGACAAAATTAGAAAAACATGGTTAGAATATATGAATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGAAAATTTTTTCAATTGAAGGAAAAAATCTATCACCTGCTCCATCTTGGTAGCTTGCAGACGGGTACACTGGTTGTTCATGCTAACAGGCTAGTGGTGCCCATGCTTAAATCACCTTGAGCATGCCTCTGACATATCTGCCATACCCCAGTTACACTTAAGCTTGTTGAGGCAAAATCAACTGATATTTGCATCTCTGACTACAATAGTAGCGTGTGTACACTCTATTTATCTTCATATTGTAGCATTCTCCTACAAGTTATTATAGACAGGATTATTCCTGTCCTCAGATAAGGAAGCTGAATGTCCAGAAGGTCACTGAAGTCAAGACCTCAGATTTTAAATCCTGTCCTTTTCCCATTAGAAGGGTGTGCCTCACCCACCCAGTTCGTGGTGACATAGTGTCTTCCAGGGTTACTCTCTCCTCACATGGGACTCTGAAAGAAGGGTGGGTACCTCGCTCATCCTTCAACATTCATAATATGCTTTGTGAGCAAATATTTGTAAAGATAGTGTGTGATACTTGGCTACCTGTATTATTTTCTCCTCTAGCCAGCGGATGGGACTGCTGTCTGATCATTGCGGTGTGGGAATGTGGGCACGTGGCTTTTCTCGGGGACTCTGACCACTGAGGATGCGGTGGCTTGTCGGGGAATTTAAATGAGAACGAGTACCAGAGATCCCCCAGACTGTACAGAAACTATACTGGGGACCAGTAAGAAATCCACCCTCAATTACTTAATTATGAGCAGAACATTGGGATCATTCCTAAAGAATTTCAATAACTACCTTATTCTCTACAAGATAGGAGCTTAGGGCAGTTTTGTCTGGCTGCATTTGGGTTTGGGTTTTTTGTTTGTGTTTTGTTTGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGAGATAGGGATTCATATATCATATAGCACCACTTAGCCTGGAACTTGAATTCTTGATTCTCCTGCCTCAGCCTCCCAAGTGCTGGGATTAAAGGCATGTGAAATCACATCTGGCTCAAAAGTCAAGTTTTTGATATAAATAATCCAAGTAGCATAGACCACTTTTTAAAAAGCAGCTAAAGATGGGCATCTAAGGGGAAATAGATGATCTACTACCTACAGCATTCTGATTCTTAGAAGAAAGTATTTGACCTGTGGAGGAAGAAAAAGAAGATCCTAATGTTACTAGAACAACTACCCTGTGAAAGACAGGGAAGAAGGCTTGGAGGAGTCTGTGTGTCTTGTAGATGATAAATGAAATGCACCTGCCACTAGACCCATCTTTTTTAGAACACCCTGCTTCAAGACTTCTGATAAGCACTTTCTCAGCTACACAACATCAGACAGACACAACCATTTATATTACTGTCAAAAATGGTGGCCCTGCGTTATCTTCTTACATTTCCTATGAGTTGTAATCACTTGAATTTCCTGAATTGTGTACTTGAATGTATGAAGTAGTTGTGAGCTGATGACAAAGGAAAGAAGAGGGGAAGACTAATGAAGCAGTAAAGTGGGAAGCTGCATAAGTAATTCCATCTGGTGAGGACTGCAACAGACACATTGGGATATGTTTATGGAAATGTAGCTTATTAAGTTGAGTAAAGAAGAGAAAATCCGGACAAAAGCCCCTTCTGCTCCACTCCAGCCCAGGGCTTCCTGGCCAGCGGAGTTGCCTGACACCCGCAAGGGCCCACACAAGATTTCCCACGGGATCCTAAGACCTCTGGTGAGTGGAACACAGCGCCGGCCCCAATCCAATCGCGCGGAACCTGAGACTGCGGTACATAGGGAAGCAGACTGCCCGGGCCTGACCCGGGGCAAAAGCCCCTTCCGCTCCACTCGAGCCCCGGGCTTCCTTGCCAGCAGAGTCACCTGACACCCGCAAGGGCCCACACAGGATTCCCCACGGGATCCTAAGACTGCTGGTGAGTGGAACACAGCGCCGGCCCCAATCCAATCTCGCGGACCTGAGACTGCGGTACATAGGGAAGCAGACTGCCCGGGCCTGACCCGGGGCAAAAGCCCCTTCCGCTCCACTCGAGCCCCGGGCTTCCTTGCCAGCAGAGTCGCCTGACACCCGCAAGGGCCCACACAGGATTCCCCACGGGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCAGCCAGGAGTCCTGTTCGAACACCAGATATCTGGGTACCTTCCCTGCAAGAAGAGAGCTTTCCTGCAGAGAATACTCTACCCACTGAAACCAAGGAGAGTGCTACCCTCCCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGTACAAACTCTTAACAGAGACAACTATAACAGCTGGCTTCAGAGATTACCAGATGGCGAAAGGCAAACGTAAGAATCCTACTAACAGAAATCAAGACCACTCACCATCATCAGAACGCAGCACTCCCACCCCACCTAGCCCTGGGCACCCCAACACAACCGAAAATCTAGACCCAGATTTAAAAGCATTTTTCATGATGATGATAGAGGACATCAAGAAGGACTTTCATAAGTCACTTAAAGAATTACAGGAGAGCACTGCTACAGAGTTACAGGCCCTTAAAGAAAAGCAGGAAAACACAGCCAAACAGGTAGAAGACCTTAAAGAAAAACAGGAAAACACATCCAAACAGGTAATGGAAATGAACAAAACCATACTAGAACTAAAAAGGGAAGTAGACACAGTAAAGAAAACCCAAAGCGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAGATCTGGAACCATAGATGCGAGCATCAGCAACAGAATACAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATAATAGGAGTGGATGAGAAGGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATAATTGAAGAAAACTTCCCAAACATAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAACCAAGAAAGTAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATTAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGGATAAAATCGACCTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGAGCACCCACATTCATTAAAGACATTTTAGTAAAGCTCAAAGCACACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAAGGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGTATCTTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCATGTAAAAACTGAACAACACTCTTCTCAATGATACCTTGGGCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACAGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTTACTAAAGGGCACATGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATACTTAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAGTCAGGATGAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATTCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTTGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCATATGATCATCTTGTTAGATGCAGAAAAAGCATTTGACAAGATTCAACACCCATTCATGATTAAAGTTTTGGAATTTCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAGTATAAAATATCTTGGCGTAACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGTAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAAACAGACAAGTAAACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTTGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAAGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCATGTGCTGTAAGATCGAAAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAACAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGCTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAACAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGCGGACACTATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGTTGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAAAGCTGACACCATTGCATACCCTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTATCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCAAAGGCTCCCAATGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCCCGGAGCTCTTGACTCTAGCTGCATATGTAACAAAAGATGGCCTAATCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCATACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAATAAATAAATAAATTCCACTGCAAATAGTAAAAAAAAAAAAAAAAAGAAGAGAAAATCCTGTGGAATAACTTCCTGAACATTCAAAAATTATATGATGCTTATCTTTGACAAAAAGTACCAGTGATAAATTACTACTGTAGTTCATTTTTCTAAACACATTATCACATATTTTAAAATTGGTTGTAATATAATAAGTGTGGTTAAGGAAAGCTTCAGCTCATTCCCTGTCCTTCCCATAGAGTCAGTCAGTGCTTCGGGGAAAGCTCTCTCAGCTGAATTGTTCAGACTGTTTAGGAAATAGAAACTAATCACTTAGGTAAAAGTGGCAGAATTAAATGATGTCTAAATAACTACTTGATACAGTCAATAGGATAGGTTCCCTATATTCATCATAATTTTAGGTAGAATACTTTTAAACTATAACTGATGAACATTTTCAACAATAAAAATCAGTATTGCTCAAGTTTCTATTTTAAAATTTGAATATTTTAGTTATAGTTCCATCTATGATTATAGTCTTTGCTCTTCATTCTGATGCTTGTGCCTTTTCGTGCTTGGATTTGTTTTACACATAAAAGTGTTTCGCCTGCATATGTATATGCATACCATGTATGTGCCTATGCATGTGGAGATGAGGAGGAATAGGAGATGCCCTGGACCTGGAGGTGTGGGTGGTTTGGAGCCATCATGTGGATGCTGGGAACCAAAGCTGGGTCCTCGAGAACAGCAGGAAGTGCTCTTAAACAGCGATCCACCTCTCCAGCCTTTCCTGACTTATATTTTGATAAAGTTCTTGGAAGAATATTTAGTATGCTGTCTTGTTTTGGGCTTGTTTGGTTGGTATTTTGTTGCTAATTTTAAATTATGTTTTTAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGTCTTGTTTTGGGCTTG
59.86
TGGGCTTCTTCTTGTGACTCT
58.95
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGTCTTGTTTTGGGCTTGT
59.86
TGGGCTTCTTCTTGTGACTCT
58.95
151
PCR template sequence:
TATATTTTGATAAAGTTCTTGGAAGAATATTTAGTATGCTGTCTTGTTTTGGGCTTGTTTGGTTGGTATTTTGTTGCTAATTTTAAATTATGTTTTTAAGGTACAGTGAACCAGCCGTGCGGTCCTCGTACTCCTGTCGTTTGTTAATCTGATCTTCACTTGGTTTTAGAGTCACAAGAAGAAGCCCAAATGTAGTATTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
73
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(4), mmu-miR-466d-3p(4), mmu-miR-9-5p(3), mmu-miR-211-5p(3), mmu-miR-204-5p(3), mmu-miR-196a-5p(3), mmu-miR-29b-1-5p(3), mmu-miR-1198-5p(3), mmu-miR-466b-3p(3), mmu-let-7a-5p(2), mmu-let-7b-5p(2), mmu-miR-26a-5p(2), mmu-let-7c-5p(2), mmu-miR-181b-5p(2), mmu-miR-153-3p(2), mmu-miR-125b-1-3p(2), mmu-miR-680(2), mmu-miR-29b-2-5p(2), mmu-miR-335-3p(2), mmu-miR-452-3p(2), mmu-miR-670-5p(2), mmu-miR-1904(2), mmu-miR-181d-5p(2), mmu-miR-124-3p(1), mmu-miR-20b-5p(1), mmu-miR-140-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-135a-5p(1), mmu-miR-31-5p(1), mmu-miR-15b-5p(1), mmu-miR-106b-5p(1), mmu-miR-29b-3p(1), mmu-miR-335-5p(1), mmu-miR-29c-3p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-222-3p(1), mmu-miR-132-3p(1), mmu-miR-709(1), mmu-miR-125b-5p(1), mmu-miR-339-5p(1), mmu-miR-434-3p(1), mmu-miR-351-5p(1), mmu-miR-26b-5p(1), mmu-miR-125a-5p(1), mmu-miR-199b-3p(1), mmu-miR-182-5p(1), mmu-miR-199a-3p(1), mmu-miR-511-3p(1), mmu-miR-342-5p(1), mmu-miR-98-5p(1), mmu-miR-1187(1), mmu-miR-190b-5p(1), mmu-miR-129-5p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-369-3p(1), mmu-miR-539-5p(1), mmu-miR-532-5p(1), mmu-miR-669d-5p(1), mmu-miR-188-3p(1), mmu-miR-3065-5p(1), mmu-miR-350-3p(1), mmu-miR-202-3p(1), mmu-miR-338-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTATGTTTTTAAGGTACAGTGAACCA
siRNA sets
TCACTGTACCTTAAAAACA, TTCACTGTACCTTAAAAAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.682377362
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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