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mmu_ciMan2a2_959

Basic information of circular RNA
PanCircBase ID:

mmu_ciMan2a2_959

mm39_Chr. Position ID:

chr7|80019520|80020479|-

Gene name:

Man2a2

Transcript:

ENSMUST00000098346.5

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

2

Exon/intron offsets:

0

Genomic length:

959

Exon/intron sizes in nt:

959

Flanking exon/introns:

chr7:80019493-80020479

Splice length:

959

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GCAAGTGGGGACTCGCGGGCGGTGGCGGCAGGCACTGTGGGTCGTCTCGAGTTGCCCCGTTTCGGAGCCGCTGTGCCTGGCTTCCGCTACCCTGGGGACTTTATCAGTCTCGCCGCTAGCTTCCTAAGAGTCCCTTTAAAGCACTCTGGAAGCCAGGACTGGAAGTTTTGCACAGCAGGAATCAGTACTGATGGGGACAATCCTAGAACTGGGTTGCGTTAGAAACATGGGCATTTCTTTTTCTCTTAAAAGAAATCCATTCTGTATTCTCTGAGATAGGATCTGGGCCAGGCACTGTTTCTGCTGAGTTCCAGTCAGCCCCAGGAGGTCACAGGGGAGGCAGGGTGTGAGTGTGTGTGTGTGGGGGGGTTGTCTGTCTCTCCAGCTGGTGATTGTACCCCTAAATCAAACAAAATAAAACCTCTTGTATTTATGTATACATCTGAAGGGAGGAAACACGTGGCTTGGGAGAGCCTTCTCAGAGTCCTGAGCAAGCTGTTTGCAATCAGTGGTTGTGTAATGAAGTGTGGGTCAGAGTTGGGGCTCTGTTATCCCTGTTTGTTTGTTTGTAATGTGTTACATTTATTTATGTGCATGTACGTCACAGAAAACATGCGGCAATCAGAGGACAATTTGTGGTAGTTGGTTTTCACCTTCCACCATATGAATCAAATGAATCGCTTTGGTTGTCAGGCTTGCCTGCAAGTGCCTCTTTACCTACTGCACCCCCACACTCCACATCCTGGTTTCTATAGCTTGGGCTGAGGGGAATCAGAACTCCTCTCCTACAGGACCAGCCCCAAATATATGTGCTACTTGTGTGTTGGGAGTCATAACCAAGATTTGGTACTTGAAAGCTTACTTGCTTTTTTACCCAGAGTCAAGCAAGTAGGTTGGTTCTCCTTGGGAGTCCACAGAGCGTTTGTTAGGAACACCAACAGAAGGGTTTTGCATGCCAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CCCAGAGTCAAGCAAGTAGGT

59.37

CAACTCGAGACGACCCACAG

60.39

140

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

ACCCAGAGTCAAGCAAGTAGG

59.37

CAACTCGAGACGACCCACAG

60.39

141

PCR template sequence:

TACTTGCTTTTTTACCCAGAGTCAAGCAAGTAGGTTGGTTCTCCTTGGGAGTCCACAGAGCGTTTGTTAGGAACACCAACAGAAGGGTTTTGCATGCCAGGCAAGTGGGGACTCGCGGGCGGTGGCGGCAGGCACTGTGGGTCGTCTCGAGTTGCCCCGTTTCGGAGCCGCTGTGCCTGGCTTCCGCTACCCTGGGGACT

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

11

Interacting miRNAs (#binding sites)

mmu-miR-150-5p(2), mmu-miR-495-3p(2), mmu-miR-19a-3p(1), mmu-miR-185-5p(1), mmu-miR-411-3p(1), mmu-miR-370-3p(1), mmu-miR-466d-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-342-3p(1), mmu-miR-5101(1), mmu-miR-574-5p(1)

siRNAs for circular RNA silencing
Junction sequence

TTTTGCATGCCAGGCAAGTGGGGACT

siRNA sets

AGTCCCCACTTGCCTGGCA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIMAN2A2_959_ORF_1

0.5704

-0.214885434

0.043420458

279

ORF sequence:

ATGTGCTACTTGTGTGTTGGGAGTCATAACCAAGATTTGGTACTTGAAAGCTTACTTGCTTTTTTACCCAGAGTCAAGCAAGTAGGTTGGTTCTCCTTGGGAGTCCACAGAGCGTTTGTTAGGAACACCAACAGAAGGGTTTTGCATGCCAGGCAAGTGGGGACTCGCGGGCGGTGGCGGCAGGCACTGTGGGTCGTCTCGAGTTGCCCCGTTTCGGAGCCGCTGTGCCTGGCTTCCGCTACCCTGGGGACTTTATCAGTCTCGCCGCTAGCTTCCTAA

Peptide sequence:

MCYLCVGSHNQDLVLESLLAFLPRVKQVGWFSLGVHRAFVRNTNRRVLHARQVGTRGRWRQALWVVSSCPVSEPLCLASATLGTLSVSPLAS

IRESfinder result

IRESfinder score

0.734733884

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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