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mmu_ciLpin2_820
Basic information of circular RNA
PanCircBase ID:
mmu_ciLpin2_820
mm39_Chr. Position ID:
chr17|71540922|71541742|+
Gene name:
Lpin2
Transcript:
ENSMUST00000129635.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
820
Exon/intron sizes in nt:
820
Flanking exon/introns:
chr17:71540922-71544380
Splice length:
820
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGTGTGTGCTGTTGCGTTGAGGAGTGAGCAATCTTGAGATACTCTGAGCGAGAGGAACAGAGTGACTGTCTTTTAGCCAAATCTGCTTGTTGCTTCTGGTTTAGGGAAGCTTATAATTCATGTGTGTTGTCTTAACTGTAGTGACTTGAAAGTGTCACTTGTTTATGAAAACATATAAAAGTATTTGACTTTAGAATTTCATCTCTCACCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTTTGTGTGTGTGTGTGTGTGCACGCACGCGCATACGTGCACGCGGCTCCCCGTGCAGAGGACAAAGGACTCAGCTGTTTGTTTCTCCCATGCAGGTCCCCGGGATCAAGCTCAGCTGTCAGGCTGTCACAGTGAGCACATTTGCTTGCTGAGCATCTTGGAGACCTAGTTTAGTGTGCTCTGTACAGTCGTTAATAACAAACTGAATATGCTTATGTAACTGCATATTTTTAAATAGTACATTTCAGTTTGCAAGTATTTTACAAAGAATTCCTTCACTCCTTTGAAGAGTATGAAGCCACTTGTGAACTTAGTCATCTAAGGCCTCATTCCAGGGACCCTGTCCTCGTGTTGCTCACAGTTCCTGCTGCGTCACAACACTGTTGTCCCCCGTCCCTCACTGTTTTAAAACTGTTTTAAAAGGTTCTTTTAACCTTAGAGGAATTACTACTTCATACATTGGTTATAAAACTATTTTCTTCTCAGAAGTATGGCTTGAATCTACTGAGCCTTATACACAATGATATTTTTTAAATAAGTTATTGGGAAGACATACTTCATTTTTACT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATGGCTTGAATCTACTGAGC
55.22
CACTCTGTTCCTCTCGCTCA
59.12
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGGCTTGAATCTACTGAGC
55.22
GTCACTCTGTTCCTCTCGCT
59.11
146
PCR template sequence:
AAACTATTTTCTTCTCAGAAGTATGGCTTGAATCTACTGAGCCTTATACACAATGATATTTTTTAAATAAGTTATTGGGAAGACATACTTCATTTTTACTGTAGTGTGTGCTGTTGCGTTGAGGAGTGAGCAATCTTGAGATACTCTGAGCGAGAGGAACAGAGTGACTGTCTTTTAGCCAAATCTGCTTGTTGCTTCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(2), mmu-miR-466b-3p(2), mmu-miR-16-5p(1), mmu-miR-143-3p(1), mmu-miR-495-3p(1), mmu-miR-214-3p(1), mmu-miR-224-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCATTTTTACTGTAGTGTGTGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.903970404
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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