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mmu_ciLamc1_3024
Basic information of circular RNA
PanCircBase ID:
mmu_ciLamc1_3024
mm39_Chr. Position ID:
chr1|153127910|153130934|-
Gene name:
Lamc1
Transcript:
ENSMUST00000027752.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
3024
Exon/intron sizes in nt:
3024
Flanking exon/introns:
chr1:153127886-153130934
Splice length:
3024
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGCTGCTGGTGTAGTCTGCCCAATGTCTTAGGGACTATAGCAGGAGGGAGGGAATGGTGACTTCCTCATCGATTGGAAACTGAAATGCACTACTTCTATAGAGTAGGGTACTGAGCCACATGCACATCAGAGGAAAATGATAGATAAGGAAGTTGGTTGTGAATAAGTCCCACTGGTTTTGTTTCCTTCATGGACATCAACGTGGAAGCCGAATCTCCAAGGTTCAGGAATTTGATTAGACTCAAATACTGGGCCAATGTAGCACCTCTAAACTGCGACCTCTGAAGTCACTGTGTGGCCCTTTAAAATCAACCATTCCTCAGTATCTATATGAGATGGATTCCAGAACTTTCCTCACGTACCAAAGTCCATGCACGTTCAAGCTCTCTATGTAAATGGCGTAGTATTGGCATGTGACCGTGCACTCTCTTCCACGTCTGTTGTCTGTTGGTTACAGTGTAGACGCCATGTAAATAGTCCCACATTATTTGGGGAATAAGGACAATAGAGAAAAGTCTGTATATATGTATTCAGACATAAGTACAGACATTATTTCCCCCTACATAGTTGATGATTGATGGGATCTGTGGGCGTGCATCACCCTAGGTACACTTGTTTAGACTCCTGCACTCCAGCAGCCAGCTTGGTTAGCATGTGTCAGTACACTGACTCGATTCATCTTTTCTTTATCTGACCAATGAGAATAGAGGGAAGAGCTTGCCCAGCCACTGCCCTGCAAATCTGGGTGGCTTCAGGAGAAGGGGTAGGTCCTGTGCCCTAGTAAAAGGTCAAGATGAAGAAGTTAACACATACTTACCCTTCAGAACGTCTTGGCTCACTGTGCACAGCCTGAGAGGGGGACTCCGGAGAGGAGACAGAGTCATGACTTGTGAAAGGCTTAATAGGAACAAACGTTAAAGCCACCACAGTGTTCTTGAGTCCTTCATCAGTCTGGGAAATAGAAAGACTGAGAAAAAAGGACTCTTGGAACTTAGAGCAGTTACCACAGCACCTTGTGAAGGACTTTTGACTGTTTTCATTGAGCTGTCTTGAGCAAATTGTATTATTCGTCTTTAATTTCTCTCAACAAAGCCCGGAGTTGCTGATAAACTTTCCCGCCTCCTCTAGCATTTCTAGGAATTCCAGGGAGCTTCTTTAATCCCATTACCTAATCCCATTACCACACTAATGTAACTGGATGTTGTAAGGCGAGGACTGGTGAAAGAGATGCACGAATTACTTCTAAAACATCTAAACACATGTGCATTTGAAAAGTATGTGTGTACCGATGTCGTGTTTCTAGTTTTTCTAGGAAATAGGAACAAACAAAATACTGTTAGCTCACTGATCACAGGCTTTGATAAGGAGCTCGCTGGATTTGCCTTCCTCCATAGTCTCTTCAGGACCAACCCCTCAGAGTATAGTTTCTGGATGATGTGACTATGACAGGACAATCAGGATACTGGGGCTAGACAAGAGAAGAACACAGCTGTCTTCTCTCATCCTAGCCATTAACGAGCGAGGTACAGCATGGCCTATAGCTTTGGGATGGAGCAGAGTGGACAAGGGAATTGTTCTGCCTCATGATCCCAACACCGGACCACTACTCCAGAAGGCTAGATTGACTGCAGGGTGTCATAGAACAGCTTGGGGGTCAGAGAAATAGCAAGTGAAAGGGGAAGGCACTGTACAACAACTACTGAAAAGGGTGGGGGCACCAACTTAACAAACTTGGTGCCAGCAACTCAAGTTTCTAAAAATGTTTTCAGTTGTAATTCTATAATAGGATATATTGTACAGAGAAAGAAAATACATATTCAGATATCTTTTAAAATAGTTTGAAAAGTATTTATTGTAAATTAAGCAAAATTTTTGTTTTTATGTGATGGACAAGAACTTATATGTGCTTTGGACAGATTAAGTCTTAGAAAATCATCTCACTAGAAGCAGCACTAAAAACTGAAATATTTCTTTATTTTGGATACCGGATCTTAGTATGTAACCTTGGAACTCACTGTGGAGACCAATCTAGCCTCAGATACATAGAAACTTGCCTCCTGAGTGTGCACTGCCAAGACCAGCCAGTTACTTAGTTTTAAAGTACGGTTGTGTTTAACAGATGACCTAGTTAGATCTGTGGTTCCCCAGTAGATGGATCTGAAGTGTCTAGATTTCCCTGTCATTCTGCTTGCGTCATCAGACATGCTAATTTAAACCTACAGGTCTCAAGTTCCCTGGTCTGGAGAGAGTAGTCTGGCTCCTTGGAAGCTGGTGTCTTAATGTGTTTGAATTATTGAGGCAAATGTCCAAAGAAAAGATGCATGATAAATTAGTACCTTGTTTTTGCTGTTAGTGCTAGAAGTAGAAGATAAGGAGTTAGGAAAATGGGTGTGATTATATACATTGTTACCCGTGGGGTGCACTGGGAGGCAGAAGCCAGCAGGTGTATGGCTCAAGGCCAGGTCTACATAGTGAGTTCCAGACCAGCCAACACTGCATAGTGAAATCTTGTCTCAGAAAAACAGAAAAATGATCATTTGACTTGGCTCTTATGTATGAACAGCCACTGGGAGACAGATTCTCTTCTGAGTATAGGAGTTCTTATGTATACTTTTTCTATGAGGATGGATATTTCTTAGTAAAGTAATGGATGATCAGGCTTTCTGAATTTGTTGACATACTGGTTTTTTTTTTTAAATAAACAATGTAGCTAGCAGTCATTTTTATTCTATGCCATCTGTCATAGAGATGTAAATTGAGGTTTGGTTTTCTTGGGAGTCTTTTAAAATGCTTTCTTAAAGGTATATAGGTCTTGGAGGCTCCAGAGATGGCTCAGAGGTTAAGAACACATACTCATCTTCCAGAGTTTATTTCCCAATAAAGCACCCATGTTGGGTGACTCACCACTGCCCCTAACTCCAGGTCCAGGGGATCTGATGCCCTCTGCAGGCATCCACACACATACATAACATTCACTCACACAGATATACACACAGTTTGTCTTTTTAAAGATATACTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGGCATCCACACACATA
59.67
GGAAGTCACCATTCCCTCCC
59.74
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGGCATCCACACACATA
59.67
TCACCATTCCCTCCCTCCTG
60.62
140
PCR template sequence:
CAGGTCCAGGGGATCTGATGCCCTCTGCAGGCATCCACACACATACATAACATTCACTCACACAGATATACACACAGTTTGTCTTTTTAAAGATATACTTGTGAGTGCTGCTGGTGTAGTCTGCCCAATGTCTTAGGGACTATAGCAGGAGGGAGGGAATGGTGACTTCCTCATCGATTGGAAACTGAAATGCACTACTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
38
Interacting miRNAs (#binding sites)
mmu-miR-221-3p(2), mmu-miR-34a-5p(2), mmu-miR-148b-3p(2), mmu-miR-148a-3p(2), mmu-miR-384-3p(2), mmu-miR-1187(2), mmu-miR-23b-3p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-199a-5p(1), mmu-miR-34c-5p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-miR-222-3p(1), mmu-miR-132-3p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-127-3p(1), mmu-miR-212-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-34b-5p(1), mmu-miR-297a-5p(1), mmu-miR-466d-3p(1), mmu-miR-224-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-1198-5p(1), mmu-miR-466p-5p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-369-3p(1), mmu-miR-539-5p(1), mmu-miR-669d-5p(1), mmu-miR-3087-3p(1), mmu-miR-3065-5p(1), mmu-miR-3470b(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TAAAGATATACTTGTGAGTGCTGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.775117085
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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