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mmu_ciKif13b_1016
Basic information of circular RNA
PanCircBase ID:
mmu_ciKif13b_1016
mm39_Chr. Position ID:
chr14|64964635|64965651|+
Gene name:
Kif13b
Transcript:
ENSMUST00000100473.5
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
1016
Exon/intron sizes in nt:
1016
Flanking exon/introns:
chr14:64964635-64965661
Splice length:
1016
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGTTCCAGGATCACATTCTTGAGTCACTCTATGGGGCTGATAGAAAAACAGGGGAACATCTGGGCTTACGGAGTAAGATGATTCTGGAACGATTGAGGCAATGATGAGTAAGCAGTTTGGATATTTTTTCTAGTGTTTTCTATGGCCTAAGCTCATTTTCTCATCTGTGGAGTTGTTTGATGTAACTGGCAAGCACAGCCCTCAGTCAAGTCAGGACTTCTCAACAATGGCCCTATTGACATTGGGCTTAAATGACTCCTTTTCCTGTGGGTGAAGGATGTTGCGGAATGTTTGATAGAACCCCTGGTGTCCGCTCACTAAGTGATCCACTGACTCTCTTTTGACCCCCAGTTGTGACAACCTAGTCTCATCCTTGTGACTTGCTGTTATCCATGGAGCATACTCATCCTCCACTGGCTCTCGGCTGTGTGAATAGACACTGTGCCAGCTACATTGGGCTGTCCCTTTTAGTCTGCTGTTGTATTTGTCAGTATCTCAGAACCCAAACTTTATGAAGTAGTGTTCCATTTGCCAGCTCCATCACATAGTTTTCCCTCAGGCTAAATCATTACCTCTTCATGGGTTCAAGTCTTCCCTTTCTTCAGGGCTCCTAGAGATATGAGGTGAGACATTAGCCAGCAGGTGGGAACTATGGAACACTTCTTTAGCACTAGGGTATGCAGATGTCAGCTTGTTATCACTTTTGCTCTAATCAGTATTTTACCCTGGACACCCTTCTTGAAGGTGTCTGTTGGTTATATTATTATCTTCATCCTAGTTTTCCAGGTCACATATTTTATCTGCAAAAATGAAAAATAAACAGTGCTAAGTGTTTTTATTGTCTCAAGTAGCTCAGATGGACAGTAGCCTTTGGGGGCTCGGTCTTCAGATCAGACAGCAAAGTGCTGACCACAGCACTCATTACATGCAGCCAAGGGCACCTTGCTGCTGTCCATCCTTGCAACTAATGTGACATTCGATATTTTCTGGCTTAGATAATTGTGCTTTTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGTCCATCCTTGCAACT
59.89
CGTAAGCCCAGATGTTCCCC
60.46
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGTCCATCCTTGCAACT
59.89
CCGTAAGCCCAGATGTTCCC
60.46
141
PCR template sequence:
ACAGCACTCATTACATGCAGCCAAGGGCACCTTGCTGCTGTCCATCCTTGCAACTAATGTGACATTCGATATTTTCTGGCTTAGATAATTGTGCTTTTTGGTAAGTGTTCCAGGATCACATTCTTGAGTCACTCTATGGGGCTGATAGAAAAACAGGGGAACATCTGGGCTTACGGAGTAAGATGATTCTGGAACGATTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(2), mmu-miR-7a-5p(2), mmu-miR-23b-3p(1), mmu-miR-141-3p(1), mmu-miR-223-3p(1), mmu-miR-18a-5p(1), mmu-miR-23a-3p(1), mmu-miR-410-3p(1), mmu-miR-344d-3p(1), mmu-miR-335-3p(1), mmu-miR-697(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTGTGCTTTTTGGTAAGTGTTCCAG
siRNA sets
AACACTTACCAAAAAGCAC, GAACACTTACCAAAAAGCA, ACACTTACCAAAAAGCACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.770997466
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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