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mmu_ciKdr_430
Basic information of circular RNA
PanCircBase ID:
mmu_ciKdr_430
mm39_Chr. Position ID:
chr5|76097068|76097498|-
Gene name:
Kdr
Transcript:
ENSMUST00000113516.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
28
Exon/intron offsets:
0
Genomic length:
430
Exon/intron sizes in nt:
430
Flanking exon/introns:
chr5:76097040-76097498
Splice length:
430
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTACATCTTTTAAAAATAGTCATAAAGATAATACTTGGGGTGAAATACTAGCTAGATAAATATTAGCCTAAGCTCTTGAGTTTTGGAACCTTATTAAGGCTGTCCTTGAGCATATGTGCCCTGGGGGAGGTCGATCTTTAGTTTTGCCGTATGAAAGGCACCTGGACCAAGGTTTGGGATAGTCTTAACTGTGTGTCCAACTTCACTCAAGTGCAAATGTTGTCGCCGTGCAGAGAGGAGACCCCAACATCCTGACCTTTCCTCTCTCCTTAGCCCAAGTCTACTTCCTCGAAGCATTTGCTTCCTTTGTGGCTTGCACAGTCGCTGGCTGCCATACCCTTTCCCTCTTTGGCATGACATTGAGTCCTATTGTCAGCTAGATGGATTGAGAAAGGAGTTTAAAGTAGCTGGTCACGTGCACACTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTTTCCCTCTTTGGCATG
58.81
CCAAAACTCAAGAGCTTAGGC
57.16
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTTTCCCTCTTTGGCATGA
60.27
CCAAAACTCAAGAGCTTAGGC
57.16
180
PCR template sequence:
GGCTGCCATACCCTTTCCCTCTTTGGCATGACATTGAGTCCTATTGTCAGCTAGATGGATTGAGAAAGGAGTTTAAAGTAGCTGGTCACGTGCACACTCAGTAAGTACATCTTTTAAAAATAGTCATAAAGATAATACTTGGGGTGAAATACTAGCTAGATAAATATTAGCCTAAGCTCTTGAGTTTTGGAACCTTATTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-150-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACGTGCACACTCAGTAAGTACATCTT
siRNA sets
GATGTACTTACTGAGTGTG, AGATGTACTTACTGAGTGT, ACTTACTGAGTGTGCACGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.842486977
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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