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mmu_ciKcnd1_174
Basic information of circular RNA
PanCircBase ID:
mmu_ciKcnd1_174
mm39_Chr. Position ID:
chrX|7688629|7688803|+
Gene name:
Kcnd1
Transcript:
ENSMUST00000125440.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
174
Exon/intron sizes in nt:
174
Flanking exon/introns:
chrX:7688629-7688839
Splice length:
174
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGACAGCCCTGTGGGGCGAGGGAGGGACCCATCAATAGCTCTGTCCTTGTCTTTTCCTGGTCCAGTCCCCATGCCCTAGTCCATCCTGGAACAGTCCCCAGGGGTCCCACTGGACCTTGTCCTTCTAGAGCCTCCTTCCAAGGACCCAGAAGCCTCCTCCCCCTGTCTCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTCTAGAGCCTCCTTCCA
59.35
GGGGACTGGACCAGGAAAAG
59.96
125
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTTCCAAGGACCCAGAAGCC
60.32
GGACTAGGGCATGGGGACT
60.38
122
PCR template sequence:
TCCTGGAACAGTCCCCAGGGGTCCCACTGGACCTTGTCCTTCTAGAGCCTCCTTCCAAGGACCCAGAAGCCTCCTCCCCCTGTCTCCGTGAGGACAGCCCTGTGGGGCGAGGGAGGGACCCATCAATAGCTCTGTCCTTGTCTTTTCCTGGTCCAGTCCCCATGCCCTAGTCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-709(1)
siRNAs for circular RNA silencing
Junction sequence
TCCCCCTGTCTCCGTGAGGACAGCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.806680692
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
Institute of Life sciences, Bhubaneswar, India
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