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mmu_ciHnrnpl_810
Basic information of circular RNA
PanCircBase ID:
mmu_ciHnrnpl_810
mm39_Chr. Position ID:
chr7|28513712|28514522|+
Gene name:
Hnrnpl
Transcript:
ENSMUST00000174548.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
810
Exon/intron sizes in nt:
810
Flanking exon/introns:
chr7:28513712-28514523
Splice length:
810
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATATCCTTTTCTGGGAAACTGGTGTTTGTTTCTCAGAGTTTAGCATAGAGAATGTAAAAGACCAGGCTATGAGGCTTATAGAAACAGCTGATCAGGGTATGTTCTAATGAGATACTATTTTGTTTAGGAGTGTGTGCACCCCTTGTGAGAGTTGGGCCCAGTGCTTCCTTCATGCAGCTGTGCAAGTGAGACAGCTCAGCTCTATCCACCGTCCTCTTCCTTCTTTGAGGTGGATGGGTCCATTCTGTTAGAGAGGAACTTAGATAAGGAGCAGAAATCAAGCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGTCCTCTTTTTTGAGTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGCCTGGACAGCCAGGGCTACACAAACCCTGTCTTGAAAAAAAAAGAAAAATCAGAAGACTCCAGAATGACAGGAAAGGGGGAGAGGTTTTTGTTTTGATAAAGATGGCTTGCCTAGTGTCTCCTTGGCCAAGTTGCAGTAAGAAGCCATTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAGCCACTTTTTAAAGCAGGCAGGGTATAGATTGCAGATATAATGGGATGGCATGAGATAGTGTGTTGCTGCCATCTCTGTTGAGGCTGGGATAAGGGTGCAGACCACAGTGAACCCTAGCCAATGACTGCTTCCTGAGTACAGTCCCCGGTGTGTCCATAGCTTTTACCCGAGGCTGTATGTGGTACTGAGGCTGAGTCTAGTAATCCTTTCCCAAGCTCCACAGTTCTGCTTCCTTAAGTCTTCTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCGAGGCTGTATGTGGTAC
59.9
AGCCTCATAGCCTGGTCTTT
58.41
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCGAGGCTGTATGTGGTAC
59.9
AAGCCTCATAGCCTGGTCTT
58.41
158
PCR template sequence:
GGTGTGTCCATAGCTTTTACCCGAGGCTGTATGTGGTACTGAGGCTGAGTCTAGTAATCCTTTCCCAAGCTCCACAGTTCTGCTTCCTTAAGTCTTCTCAATATCCTTTTCTGGGAAACTGGTGTTTGTTTCTCAGAGTTTAGCATAGAGAATGTAAAAGACCAGGCTATGAGGCTTATAGAAACAGCTGATCAGGGTAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(1), mmu-miR-3470b(1), mmu-miR-1904(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTAAGTCTTCTCAATATCCTTTTCTG
siRNA sets
AAAAGGATATTGAGAAGAC, AAAGGATATTGAGAAGACT, AAGGATATTGAGAAGACTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.776879104
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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