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mmu_ciHnrnpk_145
Basic information of circular RNA
PanCircBase ID:
mmu_ciHnrnpk_145
mm39_Chr. Position ID:
chr13|58546824|58546969|-
Gene name:
Hnrnpk
Transcript:
ENSMUST00000116403.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
145
Exon/intron sizes in nt:
145
Flanking exon/introns:
chr13:58545610-58546969
Splice length:
145
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTATTAAACTACTGAACAAGCAAGCACATTCATTGTATGTTTCTAGAATTTTAAAGGTTCACATCTTAGAAATCACTGACTAGCTACAAACCATTTGTAATAATTAATGGTTATGTAAATGACTTCTTTTTTTTTAAAACC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAATCACTGACTAGCTACAAACCA
58.13
AGAAACATACAATGAATGTGCTTGC
59.13
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAATCACTGACTAGCTACAAACCA
58.13
AGAAACATACAATGAATGTGCTTGCT
60.29
120
PCR template sequence:
AAATCACTGACTAGCTACAAACCATTTGTAATAATTAATGGTTATGTAAATGACTTCTTTTTTTTTAAAACCGTAAGTATTAAACTACTGAACAAGCAAGCACATTCATTGTATGTTTCTAGAATTTTAAAGGTTCACATCTTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-494-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTTTTAAAACCGTAAGTATTAAAC
siRNA sets
AATACTTACGGTTTTAAAA, TTAATACTTACGGTTTTAA, TTTAATACTTACGGTTTTA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.939541966
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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