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mmu_ciHnrnph1_394
Basic information of circular RNA
PanCircBase ID:
mmu_ciHnrnph1_394
mm39_Chr. Position ID:
chr11|50275563|50275957|+
Gene name:
Hnrnph1
Transcript:
ENSMUST00000109142.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
13
Exon/intron offsets:
0
Genomic length:
394
Exon/intron sizes in nt:
394
Flanking exon/introns:
chr11:50275563-50275967
Splice length:
394
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGATTTTTCTCATATACTTGGAGTAGATTTCTTTAGTTGGGGGTGATAATAAAGGCTCTTTTAAAAAAGAGTGGGGTATTTTAAATGTTGTTTTTTATTATAATACTTAATTTGCAGAAATAGTCATTGGGGAGGAGAAGCATATGTTCTATTCATTGCAATTTTGGAACAGAAAATATCTGTGTTTACTAAAACATTAATTTGCTTTTCTGTTGTAGCATTAATTTTTTGACACGGTGATTCTTAAATATTTAGAATGGTGGTTGGGTTCAGGGATAATATTTTACTAATTGGTTAAGCTAGGGATGGTGTTTTTTGTTTTTTGTTTTTTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTTAAGCTAGGGATGGTGT
58.44
AGAGCCTTTATTATCACCCCCA
58.6
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTTAAGCTAGGGATGGTGT
58.44
AGCCTTTATTATCACCCCCAACT
59.47
160
PCR template sequence:
ATTGGTTAAGCTAGGGATGGTGTTTTTTGTTTTTTGTTTTTTTTTTTTCAATTGGTCTAAAGAATGGTGATTTTGGTATTATAGTCTTACCCTACAAAATGTGAGTGATTTTTCTCATATACTTGGAGTAGATTTCTTTAGTTGGGGGTGATAATAAAGGCTCTTTTAAAAAAGAGTGGGGTATTTTAAATGTTGTTTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TACCCTACAAAATGTGAGTGATTTTT
siRNA sets
AAAATCACTCACATTTTGT, AATCACTCACATTTTGTAG, ATCACTCACATTTTGTAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.974500222
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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