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mmu_ciHnrnpa2b1_567
Basic information of circular RNA
PanCircBase ID:
mmu_ciHnrnpa2b1_567
mm39_Chr. Position ID:
chr6|51440501|51441068|-
Gene name:
Hnrnpa2b1
Transcript:
ENSMUST00000069949.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
567
Exon/intron sizes in nt:
567
Flanking exon/introns:
chr6:51440473-51441068
Splice length:
567
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAATTATTAAACACAGTTCTTCTGGGTGATTGGGAAGTCATGGAAGTCCATACAGTTCTGCATCTCAGAAAGCGAGGAATCTAATAGATGCTAGCTAAGGAGAGTGTCCTCGTGTAACTGTTAAATGATTTTTGTTGGTAGTATGGGTTGGAGGGGCATTGTTTTTAGATAGGGTCTCTTATTCTAGGATTTCTACCACACCCAATTTAGTGATTAGCTCTTGAATTTAGCAATCATTTTACTCCCAGTAATCCTGGCAATGGGGAGATGGAGATCATGTTTTTCAGTCTTCCTTGTCCTTCATATGAAATCATGTCTCAAATATGCTCTGCCATTTAGCTTCATAAGGTCCAACCTATTTTAAGCTTGCTTGTGTTTGAAAGTAGTAGACTTAGAAAGGTGTGTCACACTTTTCACGTGCTTTTAATCATTAGTACTCAAAAGGAGTAAAATCACTTTATTTACATTGTAGGGCAGCCAGGTCTGTGTACAGACTATCACAAGGCTGAAAGAGAACTTAATTTCCACAATACAGACATAAACCTTCAGATTTATATATGTTCTAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGCCAGGTCTGTGTACAG
60.67
TCCTCGCTTTCTGAGATGCA
59.1
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGCCAGGTCTGTGTACAG
60.67
TCCTCGCTTTCTGAGATGCAG
60.13
172
PCR template sequence:
TTGTAGGGCAGCCAGGTCTGTGTACAGACTATCACAAGGCTGAAAGAGAACTTAATTTCCACAATACAGACATAAACCTTCAGATTTATATATGTTCTAAGTAATTATTAAACACAGTTCTTCTGGGTGATTGGGAAGTCATGGAAGTCCATACAGTTCTGCATCTCAGAAAGCGAGGAATCTAATAGATGCTAGCTAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-140-5p(1), mmu-miR-7b-5p(1), mmu-miR-335-5p(1), mmu-miR-7a-5p(1), mmu-miR-127-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATATATGTTCTAAGTAATTATTAAAC
siRNA sets
TTTAATAATTACTTAGAAC, TTAATAATTACTTAGAACA, TAATAATTACTTAGAACAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.882910636
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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