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mmu_ciGpr107_1338
Basic information of circular RNA
PanCircBase ID:
mmu_ciGpr107_1338
mm39_Chr. Position ID:
chr2|31097740|31099078|+
Gene name:
Gpr107
Transcript:
ENSMUST00000056433.7
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
1338
Exon/intron sizes in nt:
1338
Flanking exon/introns:
chr2:31097740-31099078
Splice length:
1338
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTAGAAACCAAAACAAACAAAACCCCTAAAACTGTAAATGAGATCAGTGAGCAGACCTGGCCACAGCGGCAGCCACTATGCTTGGACCTGTCAGCCGCCTCACATTCTCACATTGCTTCTCTGAAAGTGGGAATGAAAAATCTGGGTTGCTCTGAGCCTGTTAGAAGTGGCTTTAACTACGTTCAAAAGTAGCAGGTCACTCACTCACAAGCAGGAGCCATGGGAATGGCTCAGACCCTTGTATGGAGGCCAGGGTAGGGTTTGATCCCCAAGGGCACCTCTAGGCCTAGGCCAGACCTAGCAATTCCTCAGCTTGCCTTTTCTGCCCACTTAGGGATGTGGGTGCACCCTTGTGCTCTTCTCCAGGCCCCCACAGAAAGCCACTGAGTCTGCACCACTCTCTCCAGTTACCAGGCAGGAAACTAGTTTTGTTCTAGGGATGTGTCCTTTAAAAACAGAAAATTGAGGTTGGTTTTGTTTTGGGATTTTTGGTTTTGGTTTTTTGTTTAAGAAAGGGCCTCATTGTGTAGCCCTGGCTAACCTTGACCCATTGCCCCTGCCTCCGAAGTACTGGGATTAAAGGCCTGCATCATTGCATCCAGCAAGTCAGTGATGGACACAAAGCTCTGTGGCGTGAGCACAGAATATAATCTCCCAGTGTTCCCTTGACTCCCACAAGGAAGCTTGACAGCTCTGCCCAAGCAAACAAACGTTCAAATGATAGAGGCAGCACTAGGAAAGCAGGGCAGACCTCCATCTAGCTGGTCTTCTTGTGCCTGTTCGCTCTCTTTCTCAGGTTGTCTGTCTGTTCTGTTGACGTGGGCTTGTAGCATCGTCACAACAGGTGTCACAGAGCGTTTCCTGATGCCTATGACAATGCAGAGGAGACCCCAGCCTGGTCTAGTGTTCTGTGTGGTCTCCTGGCCAGCTTACTGAGACCTTGTCACAGGGTGGCCAGAGGAAGGTGTTAACAGGTTAGAGTGTGTGGTTCAGTATGTCCTGGAGCGGGAGACTCAGCTGCTCACTGTATCTGCGTGTTCCCCATGTGACCGTTTTGCTGTAGCTGCTAGGAACTGCTCCCAAGCCTGGGGTGACAAGAGTGCCCTTGGAGACGGAAGGAAGACCTGAATGTGAGTGGCAAGAAACAGAACAGCCATACCAAAGGAGCTAGCCTCCCAGGAGGGTGTGGTCAGTGTCTTAGCCACCAAGAGTAAGAAGACTTGCATAACCAGGGCTGCGGGCCACATCTATCCCGTCGGGTGACTGTTTCCTGCTTTGCAGTTATTCAGTGGCAGAGCGTGGCGCTCTAATTTCTGCTTTCCTCTTTCCTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TATTCAGTGGCAGAGCGTGG
60.11
ACAGGTCCAAGCATAGTGGC
60.04
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TATTCAGTGGCAGAGCGTGG
60.11
GGCTGACAGGTCCAAGCATA
59.75
152
PCR template sequence:
CTGCGGGCCACATCTATCCCGTCGGGTGACTGTTTCCTGCTTTGCAGTTATTCAGTGGCAGAGCGTGGCGCTCTAATTTCTGCTTTCCTCTTTCCTGCAGGTGAGTAGAAACCAAAACAAACAAAACCCCTAAAACTGTAAATGAGATCAGTGAGCAGACCTGGCCACAGCGGCAGCCACTATGCTTGGACCTGTCAGCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
16
Interacting miRNAs (#binding sites)
mmu-miR-5101(2), mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-33-5p(1), mmu-miR-709(1), mmu-miR-23a-3p(1), mmu-miR-381-3p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1), mmu-miR-434-3p(1), mmu-miR-212-3p(1), mmu-miR-705(1), mmu-miR-335-3p(1), mmu-miR-484(1), mmu-miR-3061-5p(1), mmu-miR-339-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCTTTCCTGCAGGTGAGTAGAAACC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.738384767
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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