top of page
mmu_ciGpcpd1_341
Basic information of circular RNA
PanCircBase ID:
mmu_ciGpcpd1_341
mm39_Chr. Position ID:
chr2|132381863|132382204|-
Gene name:
Gpcpd1
Transcript:
ENSMUST00000148833.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
11
Exon/intron offsets:
0
Genomic length:
341
Exon/intron sizes in nt:
341
Flanking exon/introns:
chr2:132381858-132382204
Splice length:
341
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATTAACAGTGACACAAAATGCAAATATCCCTTCAGCTTTAGTATGGTTTACGTTTGTCTGATTTAGTAATGCTCTCTGCACATAAGAATGACTGCATTAAACATGCATGGGATAGTTTTTATATATACTAGGATCTTGGTATAATTTGCTTTACTGTGTAAGATTCCTTATCTCATCCCTACTAGATACTTAAATAAACAGCTAAGTATTAGTATTTATTATTAAACTGGTAATTTCACATTGTCTGTTCTAGCTTGCTAACTTTTCAAATTACCTTATGTAATTTCTTGCATCAACTATAGATTTTTTTTTTCTAATTGCATTTTGTGTTGTTTGTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCTGTTCTAGCTTGCTAACT
57.13
ACCATACTAAAGCTGAAGGGA
56.05
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCTGTTCTAGCTTGCTAACT
57.13
AACCATACTAAAGCTGAAGGGA
56.8
148
PCR template sequence:
ATTGTCTGTTCTAGCTTGCTAACTTTTCAAATTACCTTATGTAATTTCTTGCATCAACTATAGATTTTTTTTTTCTAATTGCATTTTGTGTTGTTTGTTTGTATTAACAGTGACACAAAATGCAAATATCCCTTCAGCTTTAGTATGGTTTACGTTTGTCTGATTTAGTAATGCTCTCTGCACATAAGAATGACTGCATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-182-5p(1), mmu-miR-721(1)
siRNAs for circular RNA silencing
Junction sequence
GTGTTGTTTGTTTGTATTAACAGTGA
siRNA sets
TAATACAAACAAACAACAC, TTAATACAAACAAACAACA, GTTAATACAAACAAACAAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.960547321
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page