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mmu_ciGnl1_80
Basic information of circular RNA
PanCircBase ID:
mmu_ciGnl1_80
mm39_Chr. Position ID:
chr17|36292521|36292601|+
Gene name:
Gnl1
Transcript:
ENSMUST00000087200.4
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
80
Exon/intron sizes in nt:
80
Flanking exon/introns:
chr17:36292521-36293416
Splice length:
80
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGACTTTGAAAGGTTTGCAAGGGGGAAAGGGGATGATTCTAGTATGAGAGTGTTCTGAGGCAGGAATTGGAAGGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGAGTGTTCTGAGGCAGG
59.03
TCCCCCTTGCAAACCTTTCA
59.74
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGAGTGTTCTGAGGCAGG
59.03
CCTTTCCCCCTTGCAAACCT
60.47
66
PCR template sequence:
TTCTAGTATGAGAGTGTTCTGAGGCAGGAATTGGAAGGCAGTGAGGACTTTGAAAGGTTTGCAAGGGGGAAAGGGGATGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GAATTGGAAGGCAGTGAGGACTTTGA
siRNA sets
AAGTCCTCACTGCCTTCCA, CAAAGTCCTCACTGCCTTC, AAAGTCCTCACTGCCTTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.383866402
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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