top of page

mmu_ciGinm1_2403

Basic information of circular RNA
PanCircBase ID:

mmu_ciGinm1_2403

mm39_Chr. Position ID:

chr10|7651134|7653537|-

Gene name:

Ginm1

Transcript:

ENSMUST00000039763.14

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

3

Exon/intron offsets:

0

Genomic length:

2403

Exon/intron sizes in nt:

2403

Flanking exon/introns:

chr10:7651133-7653537

Splice length:

2403

Other database IDs:

​

​

Human Ortholog IDs:
Mature spliced Sequence:

GTGAGTACTATTGAATTGTTTCCAACATTACTGTGTCTTTAATAATATTAAATTAGTTCTGATGTGAAGTGGGACCTTAAAGTGATACATTGTTTCTATAGTAGTAGCTAAGGCATTAAAACTCGTTGATTATTGAGATGCTGTGTACTTATTCCTTCTTGGGACTGGCCTTTAGTTACTGGTAGGTTAGAAGTGTAACTAGCATAGAAGTGGTAGATTAGCATAGGTGTGGGCTAGCCAGCTGGAGAACCCTAGTTCTCATTCATCCTGGTTGTAGAAGATAGATACTAATTGTATGTGCGGCTCCTCCTTTATTGTTCTTACTCATCTGTCAACAAAATGCTCTTCTTTTTAGACTCATTTCTTTTTATGTGTATGGTGTTTGGTCTGCATGCATAGCTGTGCCATATGTGTACTTGGTACCCAAGAAGGCCAGAGAGGATGTTGGATCCTCTGGAACGGGAGTGGTTGGCAGTTGTGAGCCACTGTGTGGGTTCTGAGGACTGATCCCAGGTCCTCTGCGAGAGCAGCAGGTGCTCTTTTAAAAAGCCCCTGCTTTTCTCTTTAAACCTCAAGGGTTTTGGTTATTTAAAGAATCGAATAGTGTTATGTTGGGCTGTATAATTTTATTTGAGTAACATAAAGGACATGGGAGATGTGACTCCTGCTCTGTGCCTCCTGAGAAGTCATGACTGGGCCTGTCTGGCACTGAGGTGGGGAGTTAAGCAGGGTTATTCGTTCATGCCTGGAAGCAAGCATCACTGAGAAAATTCTTTCAAAGCTGATGACTGCAGTGAGGAGGAAGTCAACATCGGTGGATTTTGCTGTTGTGAATTTATTCTGTGGCAGGGGTATGAGAGCACCTCTTTGTTGTATTTCTCTTGTGCCCCAGGCTGTGGGCTTAGACATGCTGACCAGGCTGGGAGGGACACTAGTAAGTAAATAGGACAAAAACACTTGATTTATTAAGCCAGTGACATGCAGATTTGTGTTTCCATAGTCCCAGCTCCTGGCTTGGCCTAGGTAGGAGAATCACTGGGTCTGGATAACTTAGTGAGGGAAGATGCCCGCCTCCTGCCCCAGCTCAGAGAGGTGCTGAAGACAGAGCTCCGTGGTAGATATTTGCCTGACAAGTGAACTGCCGGGCTCCATCCTCAGCAGCACAGTAAGCGCAACACAGCCACACAGACAATAAAAGAGGGGATGCTGAGGAGCCTGAGAACTCAGGGCTGACAGCGCTGGAGCCCAGAGGGCACTAATCACAATCACATCATGGCCACATGCCCCAAATTACTGTGAGCATGCTATGGCTAGAGCCTGAGGAAAAGCTGAGTGAGGTGACTGACAATACTAAGTAGCTAATGAATTGGTATCCAGTGTTCTAGATCAAAGGAACAGCCCTTTAACGGCTCACAATGAGCTTAAGCCCCGAGGTGTGCATTTAGGAACGTGTATTTGTATTCTTTTTGACAAGTAGTCCTCATATTTGGGAGACAACAACTAAATGTTCATGTTGTAGCAAATTGATCAGTGTGTACCTCTTTACAAGTGTTTTAAAGGTTTGTCTGTGCAGGTGCCCACAGAGGTTAGAAGGGAGCATTTGATCCTATTACAGCTATTTGTAAGATGTCTGCTGTGTATGCTGGGTTCTGAACTCAGGTCCTCTGATAGGCTAGTAAGCTCTCATAATGGATGGACCATCTCTCTAGTCTCTTAATTTGCTGTTTGGAGAAAGTCTTATTATGCAGCCCTGGCTGGCCACATGCTGCCTCAGCTGCCCAAGTGCTGGGATTAGAGGTGTGTACCTCTATTCCTGGCTGCTTTCTCGTTTAAAATGTTTTCTTTATCTTTGAGAATTCCATACATGTATACAATGAAATATGTTCAGATCTTTTCCCATCACCATTACAGAGGACTAGACCTCTCTCCCTTTCCCCATTCCTGATCTGTCCAGCTATAAAAAGCCACTTACTAGGTGCAGAGAGTGAAGGAAAGAAGTAAAAAGTAAAGGCTTGCATGTGTGCCCTCCTCTGACTGCTGGCTTTGTGAGTGTGAGACTGGCTCCCTGGAGCGGAGCTTGCTGTCCACGTGCACTGTGTTGCTCCTCACTGGCAAACACTGAAACCCTAGCAGAGGAGCAGCCACTGCAACGTGGCACATTCCGACTGCAGACCAGCAAGCGTTTCTTTATCCAGTGGCTAGATGCCACTGGAAGGACTTGCCAGCTCATCTCTGCTTTTATAAATCTGAGACTGGTAAGGTCAAGGACAGAGGAAGCCAGTAAAACACGTTTGCTGCGGTCGTGTTCCAAGTCCATGTCATAGAAATCATCAAATACCATAACTGCTATAATGGCAATTTTTGTACAAAATCTCACTACTTTTGTTTTTTGTTTGTTTAATA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TGTTCCAAGTCCATGTCATAGA

56.82

AGGTCCCACTTCACATCAGA

57.97

177

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TGTTCCAAGTCCATGTCATAGA

56.82

GGTCCCACTTCACATCAGAACT

59.96

176

PCR template sequence:

TGTTCCAAGTCCATGTCATAGAAATCATCAAATACCATAACTGCTATAATGGCAATTTTTGTACAAAATCTCACTACTTTTGTTTTTTGTTTGTTTAATAGTGAGTACTATTGAATTGTTTCCAACATTACTGTGTCTTTAATAATATTAAATTAGTTCTGATGTGAAGTGGGACCTTAAAGTGATACATTGTTTCTATA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

19

Interacting miRNAs (#binding sites)

mmu-miR-680(2), mmu-miR-452-3p(2), mmu-miR-200a-3p(1), mmu-miR-103-3p(1), mmu-miR-152-3p(1), mmu-miR-148a-3p(1), mmu-miR-298-5p(1), mmu-miR-324-5p(1), mmu-miR-185-5p(1), mmu-miR-495-3p(1), mmu-miR-370-3p(1), mmu-miR-183-5p(1), mmu-miR-107-3p(1), mmu-miR-27a-5p(1), mmu-miR-802-5p(1), mmu-miR-484(1), mmu-miR-350-3p(1), mmu-miR-544-5p(1), mmu-miR-146b-5p(1)

siRNAs for circular RNA silencing
Junction sequence

TGTTTGTTTAATAGTGAGTACTATTG

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.737668439

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

bottom of page