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mmu_ciGart_828
Basic information of circular RNA
PanCircBase ID:
mmu_ciGart_828
mm39_Chr. Position ID:
chr16|91421373|91422201|-
Gene name:
Gart
Transcript:
ENSMUST00000023684.14
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
17
Exon/intron offsets:
0
Genomic length:
828
Exon/intron sizes in nt:
828
Flanking exon/introns:
chr16:91421352-91422201
Splice length:
828
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACAGCTCCTTCTTGGCTTTTAGGTGTATAATCTGACTATAACTCAGCTCTGTACCTTTCTTCCAGCCACTGCCCTGGCATCTGTCTTTACCCATACACTGGTGCAGACACATCTGTCTCCACTGTGGAGCTTTGACATCTCTGGGTAGTACTCACATGCACAGCCACACTGCACAGGATAAAGTTACTACACAAAATGCCTCATGGGTCTGCCTGGAGGTTTAGCTCATCCCAAGCATTAGTGAGTGAACACCCTGACCAGGTCTCTGTGTTGGTCAGAACTCATCCGAATTTGACAGGGTGGCAGGCTGAGCCATTCAGATAGCTAACAATGATGTTGGCACACCTTCTGTCTGTCTGTCCATCTACTCAATGCTGTGTAGGTTTTCTTTACAGGCAGGTTCTCCCAGGGCTGCGTAATAACATCCTTCAGCTTACACTGTAGTAGAAGCCACCCCCATCCCCCTTCTCAAAACAGCATCCTATGTCAGTCTTGAGTGACCTTGCTGGGTTGCATGCCTCCCACAAGGCCAGGATATCATAGCACTGTGTGAATGGGCTCGTTGGGAAGGCTGACAGGTTTCGGAGAACACAGGCAGGCATTCTTTTATGCAGCTATGTGTGCAGTGTGCTGATACAGTAGCTCCTAGTTGAAGTAGTAATTACATATGTTCACCTTCAGTATGGTTTTAAAAGTGAGAGATGGTAAATGTTATTAACCTGGTATTTTAGTTCCTGTATATTTTACTTTCAGCATAAAATACAATAATTTAAAGTTTTCTTATGTTTTTCTATTATTCCTATTAATTCATAGTTGTTCTTATTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTTCCTGTATATTTTACTTTCAGCA
56.91
GCAGTGGCTGGAAGAAAGGT
60.54
171
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTTCCTGTATATTTTACTTTCAGCA
55.65
GCAGTGGCTGGAAGAAAGGT
60.54
170
PCR template sequence:
TTTTAGTTCCTGTATATTTTACTTTCAGCATAAAATACAATAATTTAAAGTTTTCTTATGTTTTTCTATTATTCCTATTAATTCATAGTTGTTCTTATTTGTAACAGCTCCTTCTTGGCTTTTAGGTGTATAATCTGACTATAACTCAGCTCTGTACCTTTCTTCCAGCCACTGCCCTGGCATCTGTCTTTACCCATACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-10b-5p(1), mmu-miR-139-5p(1), mmu-miR-10a-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTTGTTCTTATTTGTAACAGCTCCTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.862822269
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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