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mmu_ciGalns_914
Basic information of circular RNA
PanCircBase ID:
mmu_ciGalns_914
mm39_Chr. Position ID:
chr8|123330964|123331878|-
Gene name:
Galns
Transcript:
ENSMUST00000015171.11
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
914
Exon/intron sizes in nt:
914
Flanking exon/introns:
chr8:123330952-123331878
Splice length:
914
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTGCTGCTGTTCCCCGACCCCACTCTTGGGACCCAGTCAGCCTGCAGAGTCTGGCACCCTGCCCCTCCAGCCCTGCTCTAGGTAGGACAGCATTTCTCAGGTGTCAGGAAGGCTGCAGGTGGAATGAGGACTTCATTAATGATCATACTGGCTCCTAACTCTGAGTCTTCTGGCTGCCATAGGTCTGAAGCTCATTGGGGCCCTTTAAGGGCAATAGCTTGCCCGAGCTTCTGCTATTTGCCTCCCAGCAAGCAAAGATCACTCTGCCCCAGAGGAGGGCTGGTGTCTGTCTCCTAGAACTGCCACACTGCCCTTAGAAGTGGTCTGCACTTCCTGGTCACAGGACAAGGATATTGTGGGGAGGCAATGAGGCCATGTCCTCTTCCCAGGGAATGTCCCACCTATTTTACTGGTGTTATAAAAGTGCTGACATTAAGAAAGAACAATAAATAGGATGAGTGGGCAGTAGGAGGCAGGTCACATGGTCTACAGTCTTGTGGCTGTCCCAGAGCTTGAGAACTGCGCACAGGAGCAGAGCTGACTGGCAGAGCTCAGCTGCATAACCCTCCATCCATCCTCAGGCCACTGTGCCATCTCCCAATGCCGGAGCTTGGCAATACAGAGGCTAGAGGGGTTGAACCACAACAGCCAGGCTGCAGTTGTGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAGGCTAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCCAGGGTACACAGAGAAACAGAACCCAAGAAATACAACAGCTTCGTGTCAACCTGACACATTCAGGACAGACCCATCCAGGTAGCTGCACACATGGGAGATGCTGCAGCGCTGTCTAAGGGTCTGACCGGATTTGTTACACTGTCTGTTTTTAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GACACATTCAGGACAGACCCA
59.65
CTGACTGGGTCCCAAGAGTG
59.68
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACACATTCAGGACAGACCCA
58.57
CTGACTGGGTCCCAAGAGTG
59.68
144
PCR template sequence:
GACACATTCAGGACAGACCCATCCAGGTAGCTGCACACATGGGAGATGCTGCAGCGCTGTCTAAGGGTCTGACCGGATTTGTTACACTGTCTGTTTTTATGTAAGTTGCTGCTGTTCCCCGACCCCACTCTTGGGACCCAGTCAGCCTGCAGAGTCTGGCACCCTGCCCCTCCAGCCCTGCTCTAGGTAGGACAGCATTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-322-5p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-709(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-3087-3p(1), mmu-miR-3470b(1), mmu-miR-7a-1-3p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTCTGTTTTTATGTAAGTTGCTGCT
siRNA sets
AACTTACATAAAAACAGAC, CAACTTACATAAAAACAGA, ACTTACATAAAAACAGACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.569393183
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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