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mmu_ciFus_1262
Basic information of circular RNA
PanCircBase ID:
mmu_ciFus_1262
mm39_Chr. Position ID:
chr7|127575092|127576354|+
Gene name:
Fus
Transcript:
ENSMUST00000106251.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
1262
Exon/intron sizes in nt:
1262
Flanking exon/introns:
chr7:127575092-127576389
Splice length:
1262
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCCCATGGTTTTTATATAGTATTCACTTGGATTTTCTTAGAAACAAAAAATACTGCAAAAGTGGAGAGTGATGGGAGGGGCTGTATAAATGCTAGAAACCCTGGATCTGGAAGTTTAGACTTCAGATTCTGGTATTTATTATTTCTAGTACGTCGTGGGTCTTGCTTGGGAGCTGTTCTTTTAAAGTTGATGGTGTTTTAAAGTCCAAAAATTACTAAACCAGACAATTTTTTACTTATTTTTTTGGATTTTTGAGATGGATTTCTCTGTATGACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGACAGACATGATGTTTCGTACCTTTATTCCTAACAGGATGATCTCTTGAGTTCATGTCTAGGCCATCCTGCTCTACAGAGCTAGTTCCACGACAGCCTGGGCTATACAGAGAAACTAAACTCAGTTTTAAAAACCAAAACAAAGAAATGCACACATGTAAACTGTTGAGTAACATTAGGTGGATAAAAAGACCAGACTGAAAGATGTGTTAAGGGAACCACTTTACTAGATGTTTTTTGATGGTATTCCTATAGGCTATACTATATTTAAATGTGAAATTGGTCTCATTCCTTTCTTTTGATTTTTAGTTACAGTCATCTACATAATTATTTTGAGGCAGGATCTCTACATAGCCTTGGCTGTCTTGGAACTATGTAGACCAGGCTGTTTTTAGAATTCAGAGATCTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAATACTGACTGCTCTTCCAGAGGTCCTGAGTTCTAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGATGTGTCTGAAGACAGCAGACAGTGCTCACATACAGAATTAATTAAAAAAAAAAAATTCAGAGATCCACTTGTCTCTGCATCCAGAGTGCTGATATTAAAGGAGTGTTCCACTATGCCCTGGCATAAAAAGTTTTTTTTTTTAAACTAAGGAGTCTAGAAATGAAAGTTTGGAAACTGGTTTTTATATTGGGTGTTGGTGTTTCAAGGACAGTAATGAGTAAATGTAAAATTTTTGAAGGAAGTAGATAATACTTAAATATGGATTGTTTTTGATTATCCAATAAGATACTGTGTAACTGGTAAGAATCCTGAGCATTTTTCTTGAAAGCTTTAAAAGTACACATATATGGTTGGTATACCTGGCTAACTTGTCTTTCCGTTTTTTCTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTGGTAAGAATCCTGAGCA
55.85
CCCTCCCATCACTCTCCACT
60.33
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTGAGCATTTTTCTTGAAAGCT
59.41
ATACAGCCCCTCCCATCACT
60.03
172
PCR template sequence:
CTGTGTAACTGGTAAGAATCCTGAGCATTTTTCTTGAAAGCTTTAAAAGTACACATATATGGTTGGTATACCTGGCTAACTTGTCTTTCCGTTTTTTCTTGTAAGCCCATGGTTTTTATATAGTATTCACTTGGATTTTCTTAGAAACAAAAAATACTGCAAAAGTGGAGAGTGATGGGAGGGGCTGTATAAATGCTAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-297a-5p(1), mmu-miR-1187(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
TCCGTTTTTTCTTGTAAGCCCATGGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.855073552
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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