top of page
mmu_ciFkbp8_59
Basic information of circular RNA
PanCircBase ID:
mmu_ciFkbp8_59
mm39_Chr. Position ID:
chr8|70981916|70981975|+
Gene name:
Fkbp8
Transcript:
ENSMUST00000119425.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
59
Exon/intron sizes in nt:
59
Flanking exon/introns:
chr8:70981916-70982040
Splice length:
59
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTGGTAGGATGCCCAGCGAATATACGATGAATGAAAGGGAGCTACATGAGGGATGGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
AATGAAAGGGAGCTACATGAGGGATGGCAGTTGGTAGGATGCCCAGCGAATATACGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGAGGGATGGCAGTTGGTAGGATGC
siRNA sets
ATCCTACCAACTGCCATCC,TCCTACCAACTGCCATCCC,CATCCTACCAACTGCCATC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIFKBP8_59_ORF_1
0.5168
-0.120970834
0.01484814
81
ORF sequence:
ATGCCCAGCGAATATACGATGAATGAAAGGGAGCTACATGAGGGATGGCAGTTGGTAGGATGCCCAGCGAATATACGATGA
Peptide sequence:
MPSEYTMNERELHEGWQLVGCPANIR
IRESfinder result
IRESfinder score
0.006170348
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page