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mmu_ciFbxo7_871
Basic information of circular RNA
PanCircBase ID:
mmu_ciFbxo7_871
mm39_Chr. Position ID:
chr10|85882674|85883545|+
Gene name:
Fbxo7
Transcript:
ENSMUST00000130320.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
871
Exon/intron sizes in nt:
871
Flanking exon/introns:
chr10:85882674-85883585
Splice length:
871
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTACTTTTAAACATGAAGACTAATGCTTTGTGACTCGGATAAGTAGTGAGTCAAGGTTGAAAGGCTCCTTTTTACTCTTATTGTTAAATATTGGTAATGAAAATGTCTTTTAATTTTAGGCTTAGTCCTTACTTTCAAAGAAAAGTCAATATATTTTTCATTGAACTATAACAAGGCTTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTTCATAAAAATCTTATTGTGTTTGGGTAATCTAAATCTATTACCATTCTACATTGTGAAAAGAATAAGATGCATGGTTTTATTTGCAGAATGTGACTATAAAAATCACTGGTAGGCCTGAGGAAAACTCTTTGGGCTGAAGGACTCAAGAAAAAAATAACTGAATAAAAGCCCTCAGCTGCTTGCAGAATATACAGTATTGTTCTTGAGTCTATGTTCTGCCCTTTAAAATGGTCACTTATGCATGGTTTAAATTGCAATCTACTAGGGATGAAAAACAGGAAGTTGCCTGTTGTACCAGAATATTATTTATAACATGATGTTTTCAACAAATCCTTAAATTTCATGCCCAGAAAGGCTCAGCTAAGCCTATGTTAGACATGGAATGCTAGATTTCATTCTTAAAAATATATGCCACTGAGTTTTCCTGTTTTGGGTTTATTGATACCTCAGATTAGACAGTCACTGTGCAGCAAAGTAAAGATCAGAGCTCACTGCGTCTGGAGTCAAGGCTCTCCGTGTGGTAGAAGCTGGCAACCATTCTATTATGTGTCTGCCATGTTTGCATAGAGTGTGAGAAAGAGAAATGCAGATGACTTTATGCAGTGACGTAGCTTAGAGCTTGGGATGATCTCCACCGCTCACCATATCTTTTGTCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGACTTTATGCAGTGACGTAGCT
60.06
AGGAGCCTTTCAACCTTGACT
59.22
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGATGACTTTATGCAGTGACG
60.24
AGGAGCCTTTCAACCTTGACT
59.22
145
PCR template sequence:
GTTTGCATAGAGTGTGAGAAAGAGAAATGCAGATGACTTTATGCAGTGACGTAGCTTAGAGCTTGGGATGATCTCCACCGCTCACCATATCTTTTGTCTCGTAGGTACTTTTAAACATGAAGACTAATGCTTTGTGACTCGGATAAGTAGTGAGTCAAGGTTGAAAGGCTCCTTTTTACTCTTATTGTTAAATATTGGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1), mmu-miR-429-3p(1), mmu-miR-217-5p(1), mmu-miR-128-3p(1), mmu-miR-335-3p(1), mmu-miR-350-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATCTTTTGTCTCGTAGGTACTTTTA
siRNA sets
TAAAAGTACCTACGAGACA, AAAAGTACCTACGAGACAA, GTACCTACGAGACAAAAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.861658489
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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