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mmu_ciExoc6b_415
Basic information of circular RNA
PanCircBase ID:
mmu_ciExoc6b_415
mm39_Chr. Position ID:
chr6|84837201|84837616|-
Gene name:
Exoc6b
Transcript:
ENSMUST00000160197.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
415
Exon/intron sizes in nt:
415
Flanking exon/introns:
chr6:84837201-84837616
Splice length:
415
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGCTCGCTACCTGCACTCTCTCTACTTTTCCCTTTTTCTTCCTGGTAGCTGAGTGTATGTGTGAATGCATGCACGCATGCTTGCCTGTCTGTATGTCTCTCTGTGTCTCTGTATGTATATGCCTGTACACCTGCCTGCATGTGCTTGCTGTCATTCTGACAAAATTTTGAGTGGATGTGCCTTGAAGTAAGAATGGCAGTGAACATTTCATGACTGTTGTGTGACATCCATTATTCTAAACACTAGGTATGTATCCGGTGAGTTCATTTCCATTATTAACATGTGGGGTCAGTGGCAACATCATTATGTTTACCTCATATTCTATGGGATTAAGCTTCCCCAGATAAGTAACTGATTTTTACATCTTAACGTAATAACACAGAAACAGTAATTTTGCTTTGCTTTGTTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGATTAAGCTTCCCCAGAT
56.64
GCGTGCATGCATTCACACAT
60.46
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGATTAAGCTTCCCCAGAT
56.64
GCGTGCATGCATTCACACA
60.08
166
PCR template sequence:
CCTCATATTCTATGGGATTAAGCTTCCCCAGATAAGTAACTGATTTTTACATCTTAACGTAATAACACAGAAACAGTAATTTTGCTTTGCTTTGTTGCAGGTAGGCTCGCTACCTGCACTCTCTCTACTTTTCCCTTTTTCTTCCTGGTAGCTGAGTGTATGTGTGAATGCATGCACGCATGCTTGCCTGTCTGTATGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-203-3p(1), mmu-miR-214-3p(1), mmu-miR-382-3p(1), mmu-miR-22-3p(1), mmu-miR-466d-3p(1), mmu-miR-377-3p(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-3087-3p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCTTTGTTGCAGGTAGGCTCGCTAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.875263925
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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