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mmu_ciEndov_1568
Basic information of circular RNA
PanCircBase ID:
mmu_ciEndov_1568
mm39_Chr. Position ID:
chr11|119391529|119393097|+
Gene name:
Endov
Transcript:
ENSMUST00000106244.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
1568
Exon/intron sizes in nt:
1568
Flanking exon/introns:
chr11:119391529-119393118
Splice length:
1568
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGAAGGGCTTTGGGACTCCCTGTGACTCAACCAGGTGTGCCTGTGTTAGCCACCTCTTGGGGCACCTCAGCTCCAGCCTGGCCTGCTGGCACACCCTCACGTCACTGGTGTCTTACCCAGAAGCAGACCCACTTTTCCCTGGGCACTGCCTTCCAAGTGCCTCTGGACAGTTCAGAGCAGTGGCTCAGCTCTCATAAGCTTCCTGGGTGCCTCCCACCATGTTTGTCTCCCCTACTTCCTTGCTTCTGTGCCAGGATCACACGCACGCAGGGCCATGTCCTCCAGTCCCCGGGGACAGGGTTTCCAGGTTTCCATATCACACTAGCCACCTTCTTCCCTCCGTGGTGTTCACAGTCAGCCTGCAGACCCTGCTTACTGTCATTGTGACTGTAGTCCTTGCTCTGCCCCCAGTGTACCATTTTCTACCCTAGATCCTCACTTCATCCAGGGGAAGCCATTGACATAATGTTTATCCCACAGAACGAAGTTCCAAGAGACCTGACTGTCTCTTTCCTAGTTCCCAGGAGCCTGTGTAGAGAGTGAGTTATGTGTTGAGCTGGCAGAGTGGACAGACCCAGGTCCGCTCATGGCAGCCTGATCATGGCAGCCTGATGGATAGATGTACTGGCCCTCCCCACCCAGAAGGAAGGGGCTGTGGGTTGACTTGTGCCAAGCCCCTAGCTAGAAAGGAAGCTTTCAGGAGGTGGCAGCTTCAGCCTGGACATGGACTGCTGTGCCCAGTGTCACCTGTGTGCCCTCCACCTGCCTCTTGGGGCCTTGGCAAGCCACAACCCTTTTTCTAAGCCTCAGTTACCAGAGTAGATGGAACTTCATGGCAGCGACCTCAGCACAGTCACCAACATATTCAGTGTGGCCCCTGTGGGGTCTGGGAGGGCACCTTGCATCCCTGCCTAGGCCTTTGAAATGAAATTTGCTGGGCTGGGGCAGTGGCTCAAGACTTAGAGTACATCCTGCTCTTGCAGGGCCCACTCTGGGCTCCCAGCTCCAATGCTGCATAGCTGACGACCATGGTAACTTCAGCTCCCAGCAATCTGATGCCCCAGCTTCTCTGAGCATCTGCCCTCATATCCCCCACAGACATCTACGCATGCCCTGTTCTTAAAGATAATCTTTTAAAGAATCAAGTTTGCCCTTCAGCTGTTTGAGAAGGGGCAGTGGGTTGAGGGATGGCTCCATCAGCAAAGTGCTTATCCTGCGTATAAAGACTTGAGGTTGGTTCCCATTAGCCATGTAAAAAGTGCTGAGCATGGGGGCCGTGCTTGTTATGCCAGCATCAGAACGGCACAAAGGCCTCTTGGTGAGCTCCAGGCCAATGAGACTCCTTCCCGAAGAAGGTGAACGATGCTCCTGAGGATGGTGTATCTAGCCGACCTGCACTTTTGCTTGGGATTTGATTGTTTGTTAGTTTGTGTGAGATGGAGGTCTCACTGTGTAGTCCTGTCTAGCCTCAAACTCACAGAGCTCTGCCCTCTGCCTGTCTGGCGCTGGGACTAAAGGTGTGCACTAGCATTCCTGCGATACATGTTTTTAAAAAGGTATTTTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTCAAACTCACAGAGCTCT
60
GCACACCTGGTTGAGTCACA
60.46
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTCAAACTCACAGAGCTC
58.56
GCACACCTGGTTGAGTCACA
60.46
143
PCR template sequence:
GCCTCAAACTCACAGAGCTCTGCCCTCTGCCTGTCTGGCGCTGGGACTAAAGGTGTGCACTAGCATTCCTGCGATACATGTTTTTAAAAAGGTATTTTTAGTGAGAAGGGCTTTGGGACTCCCTGTGACTCAACCAGGTGTGCCTGTGTTAGCCACCTCTTGGGGCACCTCAGCTCCAGCCTGGCCTGCTGGCACACCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-324-3p(2), mmu-miR-134-5p(1), mmu-miR-93-5p(1), mmu-miR-103-3p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-339-5p(1), mmu-miR-139-5p(1), mmu-miR-495-3p(1), mmu-miR-214-3p(1), mmu-miR-128-3p(1), mmu-miR-22-3p(1), mmu-miR-107-3p(1), mmu-miR-342-3p(1), mmu-miR-377-3p(1), mmu-miR-1198-5p(1), mmu-miR-300-3p(1), mmu-miR-3087-3p(1), mmu-miR-490-3p(1), mmu-miR-3061-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAGGTATTTTTAGTGAGAAGGGCTT
siRNA sets
CTTCTCACTAAAAATACCT, CCTTCTCACTAAAAATACC, TTCTCACTAAAAATACCTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.714371384
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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