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mmu_ciEml2_528

Basic information of circular RNA
PanCircBase ID:

mmu_ciEml2_528

mm39_Chr. Position ID:

chr7|18915662|18916190|+

Gene name:

Eml2

Transcript:

ENSMUST00000117338.8

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

5

Exon/intron offsets:

0

Genomic length:

528

Exon/intron sizes in nt:

528

Flanking exon/introns:

chr7:18915662-18916194

Splice length:

528

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTAAGTGTGGAGGATGGGCGTGAGTTCAATGATGGTAGCCTGCTGAAGACTTGGGGTCCTGGCTTCTGGGCCTTTGGTTGTCTGCCTTCAGTTTATGCACCTGTTCAGAAAGGAAGATGGAGGGGAACAGGGAGGAAGAGAAGCAAAGAAGAGAGAAGGAAAGGGGAGGGAAGAAAGGATGGATGGAAGGAGGTTTGGTCTAACCTAGTAACCCAGCATTTGGGAGCATGAGACATTTTGGAAGTTGAAGGAAGGCTAGCCTGGGCTATATAAAGAGATTCTATCTCTATATAATTATCTGGCTGTATGGCTCACACTTGCAATCCCAGCACTTGGGAGTCAGAGGCAGAAGAATCACCTTGAGTTCCATGCCAGCTTGGACTACAGAGTGAATTCCAAGCCTGTCTTAAATTCCAGGCTAGCTGTCTCAAATAATAATAATGACGTTAGTAATAATAATAATAACAATGAGAGGAGTGCAAACAAGCCTAGGGGCTGGTGTGGAAACTGACCTCCGAGGGTGTCTTG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

AGTGCAAACAAGCCTAGGGG

60.25

GAAGGCAGACAACCAAAGGC

59.68

142

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

AGAGGAGTGCAAACAAGCCT

59.52

CAGACAACCAAAGGCCCAGA

60.18

142

PCR template sequence:

CAAATAATAATAATGACGTTAGTAATAATAATAATAACAATGAGAGGAGTGCAAACAAGCCTAGGGGCTGGTGTGGAAACTGACCTCCGAGGGTGTCTTGGTAAGTGTGGAGGATGGGCGTGAGTTCAATGATGGTAGCCTGCTGAAGACTTGGGGTCCTGGCTTCTGGGCCTTTGGTTGTCTGCCTTCAGTTTATGCAC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

6

Interacting miRNAs (#binding sites)

mmu-miR-223-3p(1), mmu-miR-214-3p(1), mmu-miR-325-3p(1), mmu-miR-5101(1), mmu-miR-3087-3p(1), mmu-miR-3470b(1)

siRNAs for circular RNA silencing
Junction sequence

CGAGGGTGTCTTGGTAAGTGTGGAGG

siRNA sets

CACACTTACCAAGACACCC, CACTTACCAAGACACCCTC, ACACTTACCAAGACACCCT

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIEML2_528_ORF_3

0.9665

-0.324811734

0.018031646

111

ORF sequence:

ATGACGTTAGTAATAATAATAATAACAATGAGAGGAGTGCAAACAAGCCTAGGGGCTGGTGTGGAAACTGACCTCCGAGGGTGTCTTGGTAAGTGTGGAGGATGGGCGTGA

Peptide sequence:

MTLVIIIITMRGVQTSLGAGVETDLRGCLGKCGGWA

IRESfinder result

IRESfinder score

0.469671131

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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