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mmu_ciEml2_528
Basic information of circular RNA
PanCircBase ID:
mmu_ciEml2_528
mm39_Chr. Position ID:
chr7|18915662|18916190|+
Gene name:
Eml2
Transcript:
ENSMUST00000117338.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
528
Exon/intron sizes in nt:
528
Flanking exon/introns:
chr7:18915662-18916194
Splice length:
528
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGTGGAGGATGGGCGTGAGTTCAATGATGGTAGCCTGCTGAAGACTTGGGGTCCTGGCTTCTGGGCCTTTGGTTGTCTGCCTTCAGTTTATGCACCTGTTCAGAAAGGAAGATGGAGGGGAACAGGGAGGAAGAGAAGCAAAGAAGAGAGAAGGAAAGGGGAGGGAAGAAAGGATGGATGGAAGGAGGTTTGGTCTAACCTAGTAACCCAGCATTTGGGAGCATGAGACATTTTGGAAGTTGAAGGAAGGCTAGCCTGGGCTATATAAAGAGATTCTATCTCTATATAATTATCTGGCTGTATGGCTCACACTTGCAATCCCAGCACTTGGGAGTCAGAGGCAGAAGAATCACCTTGAGTTCCATGCCAGCTTGGACTACAGAGTGAATTCCAAGCCTGTCTTAAATTCCAGGCTAGCTGTCTCAAATAATAATAATGACGTTAGTAATAATAATAATAACAATGAGAGGAGTGCAAACAAGCCTAGGGGCTGGTGTGGAAACTGACCTCCGAGGGTGTCTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGCAAACAAGCCTAGGGG
60.25
GAAGGCAGACAACCAAAGGC
59.68
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGGAGTGCAAACAAGCCT
59.52
CAGACAACCAAAGGCCCAGA
60.18
142
PCR template sequence:
CAAATAATAATAATGACGTTAGTAATAATAATAATAACAATGAGAGGAGTGCAAACAAGCCTAGGGGCTGGTGTGGAAACTGACCTCCGAGGGTGTCTTGGTAAGTGTGGAGGATGGGCGTGAGTTCAATGATGGTAGCCTGCTGAAGACTTGGGGTCCTGGCTTCTGGGCCTTTGGTTGTCTGCCTTCAGTTTATGCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-223-3p(1), mmu-miR-214-3p(1), mmu-miR-325-3p(1), mmu-miR-5101(1), mmu-miR-3087-3p(1), mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
CGAGGGTGTCTTGGTAAGTGTGGAGG
siRNA sets
CACACTTACCAAGACACCC, CACTTACCAAGACACCCTC, ACACTTACCAAGACACCCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIEML2_528_ORF_3
0.9665
-0.324811734
0.018031646
111
ORF sequence:
ATGACGTTAGTAATAATAATAATAACAATGAGAGGAGTGCAAACAAGCCTAGGGGCTGGTGTGGAAACTGACCTCCGAGGGTGTCTTGGTAAGTGTGGAGGATGGGCGTGA
Peptide sequence:
MTLVIIIITMRGVQTSLGAGVETDLRGCLGKCGGWA
IRESfinder result
IRESfinder score
0.469671131
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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