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mmu_ciEif2ak4_681
Basic information of circular RNA
PanCircBase ID:
mmu_ciEif2ak4_681
mm39_Chr. Position ID:
chr2|118302439|118303120|+
Gene name:
Eif2ak4
Transcript:
ENSMUST00000005233.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
36
Exon/intron offsets:
0
Genomic length:
681
Exon/intron sizes in nt:
681
Flanking exon/introns:
chr2:118302439-118303122
Splice length:
681
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTCATATGCTCTTTAACAATTTGAAGATAGCATCTGTCTGCATTGTCTAGTGTGGTCTCAGAATTCAGGGCTATTTTTGCTGTCAGCTGTATATGGTATCAACCTGGCTGTTCCTCATGTGAATTACAGGCAGTCTAACGCTAGAAAAAGCTGGGGAGAAAAGATGGTCATTTGTGTGTTTCTCTTTTTCTCTTCTTTTTTTTTCCTAAGGCCACACTCATGGTGAAGCCTTAGTAAGTGCACATGGCAGCATTGCACCTTTGAGGTGTCGATATGATCTGAACTCCAGCCTCCAGTGCTTGTTAGCTCACATAGTCCAGTTAAAGTCTGCTTTAGGAGCTGGGAAGATAACTACATGGTTTTAGGCACGTGCGGACTAAAGTTCAGGTCCCCAGAACCCACAATAAATGCCTATGATTCCAACCTCAGCTGAAGGAAGACACCAGCAAGTTGGCACAAATTAGGCATCAATTAGCTCTGGGTTTCACTCAGACTCTGCCTCAAAGAATAAGATGGAAGAGCAGCTAAGAATATTTCCAATATCAACCTCAGGTCTTCACACACATGCACGCATGTGTGCACTGAAAAAAAATTTATAGCAGCCCTGTTCTTCTCCACAGCCCCAGCCAGGGTGAGCTGCCTGTACTTCATACATGATATGCTTTCTGTGTATTAAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTTCTTCTCCACAGCCCCAG
60.32
GCCCTGAATTCTGAGACCACA
60
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGTTCTTCTCCACAGCCCC
60.32
GCCCTGAATTCTGAGACCACA
60
148
PCR template sequence:
TGCACTGAAAAAAAATTTATAGCAGCCCTGTTCTTCTCCACAGCCCCAGCCAGGGTGAGCTGCCTGTACTTCATACATGATATGCTTTCTGTGTATTAACGTAAGTCATATGCTCTTTAACAATTTGAAGATAGCATCTGTCTGCATTGTCTAGTGTGGTCTCAGAATTCAGGGCTATTTTTGCTGTCAGCTGTATATGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-709(1), mmu-miR-138-5p(1), mmu-miR-377-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTGTGTATTAACGTAAGTCATATGC
siRNA sets
ATATGACTTACGTTAATAC, TATGACTTACGTTAATACA, ATGACTTACGTTAATACAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIEIF2AK4_681_ORF_3
0.8814
-0.393306408
0.009184385
78
ORF sequence:
ATGATATGCTTTCTGTGTATTAACGTAAGTCATATGCTCTTTAACAATTTGAAGATAGCATCTGTCTGCATTGTCTAG
Peptide sequence:
MICFLCINVSHMLFNNLKIASVCIV
IRESfinder result
IRESfinder score
0.771351041
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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