top of page
mmu_ciDync1li2_311
Basic information of circular RNA
PanCircBase ID:
mmu_ciDync1li2_311
mm39_Chr. Position ID:
chr8|105149906|105150217|-
Gene name:
Dync1li2
Transcript:
ENSMUST00000041769.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
311
Exon/intron sizes in nt:
311
Flanking exon/introns:
chr8:105149862-105150217
Splice length:
311
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTACCTTTCACCAGACAGAGGGTCATGGCCCGGTGTCATGGGTGCCGTCTAACTTTACACCGGGATTGCAACAGTTTATATGTATGTGGGCTTTTATTATAGTTTTAAACTGAGTTGCTCTCCCCGAAGGCCCACAGCCAGAAATACAGTAGCACCTCAGAAGTGTTTGACGAAAGACAACAACTGATACTCCGTAAGCTTTCGTTCCTTTCTCAGGAGCCTGAGCTGGGGGCAACCCTCCACTGTGCCGCAGACACTGGACTTCAGATGGGAAAATGTGTTGACTTTGATTTTTTTGTATTTTTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGCAGACACTGGACTTCAGA
59.68
AAACTGTTGCAATCCCGGTG
59.33
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGCAGACACTGGACTTCAGAT
60.07
AAACTGTTGCAATCCCGGTG
59.33
140
PCR template sequence:
CTTTCTCAGGAGCCTGAGCTGGGGGCAACCCTCCACTGTGCCGCAGACACTGGACTTCAGATGGGAAAATGTGTTGACTTTGATTTTTTTGTATTTTTTGGTGAGTACCTTTCACCAGACAGAGGGTCATGGCCCGGTGTCATGGGTGCCGTCTAACTTTACACCGGGATTGCAACAGTTTATATGTATGTGGGCTTTTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-342-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTGTATTTTTTGGTGAGTACCTTTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIDYNC1LI2_311_ORF_3
0.93
-0.292667211
0.017429764
96
ORF sequence:
ATGGGAAAATGTGTTGACTTTGATTTTTTTGTATTTTTTGGTGAGTACCTTTCACCAGACAGAGGGTCATGGCCCGGTGTCATGGGTGCCGTCTAA
Peptide sequence:
MGKCVDFDFFVFFGEYLSPDRGSWPGVMGAV
IRESfinder result
IRESfinder score
0.832353041
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page