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mmu_ciDnajc7_356
Basic information of circular RNA
PanCircBase ID:
mmu_ciDnajc7_356
mm39_Chr. Position ID:
chr11|100481881|100482237|-
Gene name:
Dnajc7
Transcript:
ENSMUST00000239499.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
356
Exon/intron sizes in nt:
356
Flanking exon/introns:
chr11:100481877-100482237
Splice length:
356
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTCTAAGCCTGGTGTTCTGCACGTGGTGGTAGAGCTTCCTTTCATGTCTCATGGTACGAGTGAGGCTAGGGCTGCAGCTCAGTGGTGAGGTGAGGTGAGGTGTCACGCTGTCATTCCTGTGGCCCTGGATTCCGTCCCTCCTAGCAAAGTCGGGAGAAAAGAAAATAAAGAGTAGAGGAAGACTCACAGGAATGTGACAGCTCCACTTGTCAGTGTGTTAAACCTTCCCTGTGGGGGCCGGGCATGCAGGGGCCTGTGTCCCGCCAGACAGCTGGGATTGAAGAGAGAACGGTGAGAAAGAAAGACTGAGCTGAGGTTTTTTGCACTGAACTGACCGTCCCTTGCTTCTCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGATTGAAGAGAGAACGGTG
60.03
CTCACCTCACCACTGAGCTG
60.04
178
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGATTGAAGAGAGAACGGTGA
59.77
CTCACCTCACCACTGAGCTG
60.04
177
PCR template sequence:
GCCTGTGTCCCGCCAGACAGCTGGGATTGAAGAGAGAACGGTGAGAAAGAAAGACTGAGCTGAGGTTTTTTGCACTGAACTGACCGTCCCTTGCTTCTCTGTAAGTTCTAAGCCTGGTGTTCTGCACGTGGTGGTAGAGCTTCCTTTCATGTCTCATGGTACGAGTGAGGCTAGGGCTGCAGCTCAGTGGTGAGGTGAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-223-3p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-23a-3p(1), mmu-miR-188-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCCTTGCTTCTCTGTAAGTTCTAAGC
siRNA sets
CTTAGAACTTACAGAGAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.57605407
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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