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mmu_ciDis3_884

Basic information of circular RNA
PanCircBase ID:

mmu_ciDis3_884

mm39_Chr. Position ID:

chr14|99325313|99326197|-

Gene name:

Dis3

Transcript:

ENSMUST00000042471.11

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

9

Exon/intron offsets:

0

Genomic length:

884

Exon/intron sizes in nt:

884

Flanking exon/introns:

chr14:99325286-99326197

Splice length:

884

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTCAGTCAGAGCACTCTGCAGTGACGTTCACATTGCTAGCTTATCCCACAGTGTGTGTTGCTTTGTTGTTAAATTGGTGATTGAACCTAGGGCCTTATGCAAGTCAGTCAGACACTCAACCACTGGAGTAAATCCTTGGCCCTATTTTACATCTTGGTTTTTCTTTTCAGTTGGGTTTTTTACTATGTTAGCCAGTTTGCCCTGGATCTTTGTCCTGCCTTAGATTCCTGCATATCTAGGAACCAGACCACGAAGTAGTTTAATTTCTACATATGTCTTTAAATAATGTAGAAACCATGGCTGCTGCTTCACAGTTAGTTAGTTCCAGCATTATTAGCTGTTTACTGTTCTAAAGGTAGTGGAGCCTGGGAGTATGGAGACTAAAAATGAGGCAGACTAAAGTCCTCTGCAATAGCCAACTTTATTCAGAGCATCAGACAATTTATACTGAGGGTTGAATATAGGTAATCAAGTAAGGGGTACAATTACATGGACAAGTCACATGTGTCAAAAACATGTTTTTTCCAAAGAGGCATTTAAGCAAATAACAATAGCCAGCTGTGATGAATAATCTAAACTCACTCCTATCTCTACAACTAGGAGCACGGAAGCATAGTCCAAGAGCAGTTTCATGTTTCTAAAGAAATGATGTTTCTAAAGACTCTTGTTTTCCTGGAGTTTTCTCGTCAGCACTCAGGATTCTCTTTTTAAGGTGTTACAGGAATCATTTGCTCTTTTCATTGAAAGATGATGTCTCCAGGCTGTAGAATTAGGAGCTAGCATAGAACGAGTGTCTCTACAACATGGAAAGCCGACTTATTTTTATGGAAATATTGGTTTCCCAAAGAGCAGTGTTGCGATTGTATCCTCCTGGTTTTCTGTTG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TGGTTTCCCAAAGAGCAGTGT

60.06

GGCCCTAGGTTCAATCACCA

59.38

144

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TGGTTTCCCAAAGAGCAGTGT

60.06

AGGCCCTAGGTTCAATCACC

59.08

145

PCR template sequence:

GAACGAGTGTCTCTACAACATGGAAAGCCGACTTATTTTTATGGAAATATTGGTTTCCCAAAGAGCAGTGTTGCGATTGTATCCTCCTGGTTTTCTGTTGGTCAGTCAGAGCACTCTGCAGTGACGTTCACATTGCTAGCTTATCCCACAGTGTGTGTTGCTTTGTTGTTAAATTGGTGATTGAACCTAGGGCCTTATGC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

11

Interacting miRNAs (#binding sites)

mmu-miR-15a-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-let-7e-5p(1), mmu-miR-30e-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-384-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-673-5p(1), mmu-miR-3065-5p(1)

siRNAs for circular RNA silencing
Junction sequence

TGGTTTTCTGTTGGTCAGTCAGAGCA

siRNA sets

ACTGACCAACAGAAAACCA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIDIS3_884_ORF_3

0.8157

-0.198691011

0.021411849

105

ORF sequence:

ATGGAAAGCCGACTTATTTTTATGGAAATATTGGTTTCCCAAAGAGCAGTGTTGCGATTGTATCCTCCTGGTTTTCTGTTGGTCAGTCAGAGCACTCTGCAGTGA

Peptide sequence:

MESRLIFMEILVSQRAVLRLYPPGFLLVSQSTLQ

IRESfinder result

IRESfinder score

0.8538089

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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