top of page
mmu_ciDido1_934
Basic information of circular RNA
PanCircBase ID:
mmu_ciDido1_934
mm39_Chr. Position ID:
chr2|180325822|180326756|-
Gene name:
Dido1
Transcript:
ENSMUST00000087517.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
934
Exon/intron sizes in nt:
934
Flanking exon/introns:
chr2:180325821-180326756
Splice length:
934
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCTGACAACAGTCACCTTCAGGATACTTACTTGAAACAGGAAGTGTTTGAGAGGACTCTTCATAGACTGGTGTCTTGTTTGCTTGAGCAATGCAGGGGACAGCAGCTGTCAGGAAAATATAGATCATATTTTCCTTCTCTCTTCCCCCATTCACTGAGGGATTATTAGTTAACATGAATATACTACAAGCAAGCAACCATGTGGCTTTTTTAAAGAAGTATGACTTCAGGATGTATACCACACAGCTTTATGCAAAGTGCACTTGACATTTAGACAGAGACATAGGTTCTAGGCAAGGCTCTGTGCCTTGATAAGTCAGTGATAAGAGTGCCTAGCATGCAAACAGTCTTATGATTTTTACATATCCCTTTAGGGGGGAGTGTTTCTTTTGTTTTAAAGGCAGTTTTGTAGTACAGGCAGTTCTTGAACTTGGAATTTTATTCCCTTAGCCTCCCACTCAGCTGGGATTACAGTCTTGTGCCACCAAGCCTAAGTGACATAGTTTTTATTTTTTAGGACTGTTATTTTGGATCTTCAAACTCCCATAAGTAGGAATGCAGATAGCACTTGTTAGGTATTACAGACCCTTGTGCCCACGCAGCCCCCTTCACTTTGTTTTCAGCTTGTCTGACTGCCTTGCCGGAAGGCGCTCATGCTTTTATCTTGGCTGGTTCATGCTTTTATCTTGGCTGGTTCATGCCTCAGCTGCGTTATAGACAGATATGAGCCTTCCCATTACCCAGGTGTTAAAAAGAATGCTAAGGGTTCTTTGATGTGTGGCTGTAGCCATAAAAAAGATCACATGATTCTACCTAGCTTGGTTTGAAGGGTCTTCAGGTTCTAAAATAAAAGGTGTATATGTCTTTAATTGGTTGTTGAAGCAAAAGTGTCACTTCAAACCTTAATAATTGGGATTTCACTGATTATCCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTTGTTGAAGCAAAAGTGTCA
59.74
GCTCAAGCAAACAAGACACCA
59.59
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTTGTTGAAGCAAAAGTGTCAC
59.39
GCTCAAGCAAACAAGACACCA
59.59
152
PCR template sequence:
TCTTCAGGTTCTAAAATAAAAGGTGTATATGTCTTTAATTGGTTGTTGAAGCAAAAGTGTCACTTCAAACCTTAATAATTGGGATTTCACTGATTATCCAGTAAGCTGACAACAGTCACCTTCAGGATACTTACTTGAAACAGGAAGTGTTTGAGAGGACTCTTCATAGACTGGTGTCTTGTTTGCTTGAGCAATGCAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-221-3p(1), mmu-miR-26a-5p(1), mmu-miR-705(1), mmu-miR-697(1), mmu-miR-339-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CACTGATTATCCAGTAAGCTGACAAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.895553582
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page