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mmu_ciDiaph1_1131
Basic information of circular RNA
PanCircBase ID:
mmu_ciDiaph1_1131
mm39_Chr. Position ID:
chr18|38036925|38038056|-
Gene name:
Diaph1
Transcript:
ENSMUST00000115634.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
1131
Exon/intron sizes in nt:
1131
Flanking exon/introns:
chr18:38036910-38038056
Splice length:
1131
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCCACCGTCCAAGCTCTGAGGCCTCTTTCCCAGCACGTGTTTATGGGCATTTGTCTGTCGGCCTGTGGTGGTTGTTTTTAAGTGTGTGGTCTCCTAAGTTGATGTTTACTATTAAAAAAAAAAAAATCTAGGCCCAATGAAATAATGGTTAAATATGCAAGTACAAGTCCACAAGATTGGAATCTGTGAATTAAACTTGGGAATATCTGATTACTGACTACCTTGTTAATGTCTTCCTGGCAGTATCTAGCCACAAACACGCCGTATGAGTGGACCAAGCCCTGAGGTAGTGTGGTGACCATTTTGAGGCTAAGTTAGAGAAGAAGTAGTAGGGAAGCATTGACATTGAGCTTTGTGCGAAGAATACACTGGGGAGTGCAATAGGCCTGAGGTCTCTGTTTCCTGGGGAAATGGAAAGAGAGTGCTGAAGCCAGCTTACTAATAGACGGCCTCTGAGGATTGTATCTGAAGTCTGTGTAGTTGTGAGGTGTATGCATGCTTGTGACTTAATTTGCGGTCGTTAGTGAGAACAGGGACACTTTGGGTGGACACCCTGACATAGCCAGAATGAGTGATTAGGGCTCAGAGTTGGGTCAGATTTTGTTGGTGTTGATTTTTTTATGGTAGCAGTTATTCAGTGCGGGACAGATGAGGTCAGCCTTCAATGCAGAAGATATTATATATGGCTCCCTTTTAGCAGTACAAAAGAAAATATTCAACTATATTATTTCCTAGGGAGCCCCCAGAAGTGTGTGTGAGTGTACATATGTTAAAGTATCCAGTGGTATATACCAGCATGCAGGCATCATACCAAGGATGATGTCTGGGGATCTGTACTGAAATTAATTAAATTCTATCCCTGAGAAATTTTTATTAGTTATCATAACTTAAGCCTCTAGGAATCAGGAAAACATATTTGTTCACTAATGATTTATTGTGTCCAACTCATTACTAATAATTTAGTGTTGAATAATAAATATTAAACACTAAAAACTTACAAGAGGTAGAGAGATCTCTGAGTTCAAGACAAGTCTGGTCTACATAGTGAGTTCCAGGATAGCCTGAACTATACAGTAAGATCCTGTCTCAAAACAAAATCAAAAATACTTACAAGGTAATTTTTTTCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACATAGTGAGTTCCAGGATAGCC
59.36
CACAGGCCGACAGACAAATG
59.48
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACATAGTGAGTTCCAGGATAGCC
59.36
AAAAACAACCACCACAGGCC
59.46
171
PCR template sequence:
CAAGTCTGGTCTACATAGTGAGTTCCAGGATAGCCTGAACTATACAGTAAGATCCTGTCTCAAAACAAAATCAAAAATACTTACAAGGTAATTTTTTTCTGTAAGCCACCGTCCAAGCTCTGAGGCCTCTTTCCCAGCACGTGTTTATGGGCATTTGTCTGTCGGCCTGTGGTGGTTGTTTTTAAGTGTGTGGTCTCCTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-30e-5p(1), mmu-miR-92a-3p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-7a-5p(1), mmu-miR-25-3p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1), mmu-miR-218-5p(1), mmu-miR-342-3p(1), mmu-miR-3087-3p(1), mmu-miR-3065-5p(1), mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
GTAATTTTTTTCTGTAAGCCACCGTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.802888059
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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