top of page
mmu_ciDdx27_120
Basic information of circular RNA
PanCircBase ID:
mmu_ciDdx27_120
mm39_Chr. Position ID:
chr2|166866477|166866597|+
Gene name:
Ddx27
Transcript:
ENSMUST00000018143.16
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
120
Exon/intron sizes in nt:
120
Flanking exon/introns:
chr2:166866477-166868039
Splice length:
120
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGAGATAGGATGTGATGACAGAGGACGGGGTGTGCTTCACTGAACCCCAGATGGCAGGAAGGGCCTTTGTGTTAATTGGGTTCACCTAAAAATTAGTGGACATGTTTTCATGTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
AGGAAGGGCCTTTGTGTTAATTGGGTTCACCTAAAAATTAGTGGACATGTTTTCATGTGGGTGAGTGAGATAGGATGTGATGACAGAGGACGGGGTGTGCTTCACTGAACCCCAGATGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TGTTTTCATGTGGGTGAGTGAGATAG
siRNA sets
TATCTCACTCACCCACATG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.495457167
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page