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mmu_ciDctn1_5565
Basic information of circular RNA
PanCircBase ID:
mmu_ciDctn1_5565
mm39_Chr. Position ID:
chr6|83160315|83165880|+
Gene name:
Dctn1
Transcript:
ENSMUST00000077407.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
5565
Exon/intron sizes in nt:
5565
Flanking exon/introns:
chr6:83160315-83166058
Splice length:
5565
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGCGGTTTGGCACTGTAAGGGAGGAGCACAGAGCGGGAGGGAGGAAGGCCCAGGCTGGGCAGGAGGAAGCAGTAGATGGGTCTGGATTGAGTTAGGCTTGTAGTCGCCTAACCTCCCCAAGAAGGGCATCTCTGGGTATGAGTTGTAACCTTAGGGCCAGAATAAAGGTGGTAGGAGAAGTGTTGGAGTCTAGATGTTTAGGGTCGGGTAGGATTGAGTTACATGTGTAGACAGCTTCCTATCTTCTGGTATCCAAAGATGCCAAGGCGGGAGGGTGTTCGGGCAGGGTAAGGTGGGGTGTGGAGGGAGAAGCAGCTCTTTTGTTCACAAGTATTGTAAGATGCATGCAGATGGCCCTTTCCAGCTCGCTTTGCCTCTTCTGCAGAGGGCTGGAAGGTAGGCCTCTAACTTTTCTGGGCCAGGAGGTAAATATTCCTAGAAGCTGTTCCTCAGGGGACCCTTCTTTGCCCAGGGCTCGATGCTTTACCTAACTTCCCTTGCGTGTATTCACCTGAGCTGATGTTAACACTTATGCACAGGATGTATGTCAGGCCAGACAGTCTGTTCTCTAACTCTGACCTTTCCTGCTCCTCACGCAGCGGGGACTGAAGCCTAAGAAGGTGGTGTGTTTACTGTTTGTGTCTGGGCCGATGGGTGGGCTGTGAGCCCCTCCCACTCTCTTGCATGCCCCCCACCCCAACTGCTACATGCATGTGTGTGTAACCATGGGGCTGAAATGGCCAGAGGAAATGGCAGTTTGTCTTCTGGATCACCTTGAGGAAAACGAGGCCATCAGGTTCAGGGACCAAGCCAAAGCAGCACTCATTAGAGACAGTTTTCAGTGCTCTAGACCCCTAGTTAGAAACTGCAGGCACTTGACAGCAATCACAGCTGCAGCAGGTTTGCAGCGCTTTCCCAGGTAGCCAGGCTTGGCGTGGAGGGAGGGCATCCTGGAGGACTAGAGCTGAGAAGTGTGGTAGAATGGTTGTGTAAGGAAGGGCCAGAGCAGTGCCTGCCTGCCTGCCTGCTGTTGAGTCAGTACTGCCGTAGGTGCCCACCTTGCTCTGCCCAGTGGCTTTCACTGCTCCCCTCGACAAGTGTGTGTCTGCCTGGACACACTCCCTTTCAGGATCTTGCCCGTTCCACTCCCTCTTTCCACAGACTTTTCTTTAGGTCTTTTGAGAGGGTCTCACTTTGTAGCTCAGGCTAGTCTGGAATTCACTATGTAGAGCAGGCTAACCTAGACCCTGTGGCAGTCTTCCTGCCTCACCTTCTTAGTGCAGGGATTACAGATGGGCACCATCATGCCCAGCTCCTCACCAGGGGCTTTTAAACACTTAGATTGCTGCCATGACTTCCTCACACCAGCCTTGCCTTGGGCCTCCCCACAAGTTCTTTCTGCCCTGCATGTTCCTGTCTGAGCCGTGTGTGCAGTACTGTGAGCCCTTTGTTGCCAGCCTGTCTCGGGCCTTCCTGATGTTGCATGGGGAACTTCTGGATTGGGACTGTGGGAGGGGGAAAGAAAACCGCCTTTCAGCTCTGTGCGGGCATTGAAAAGACTTGGAAGTCTTACCATGGCAGAAACCATATGCTAGGACTTGTTTTTGATCCTGGGTCCTGGGTCCAGGTAGGAATGGGATTCTAAGGCAGATGGTGCTGCAGAGGGAGCTGGGCACATTCCAGACACATGAGGACTGGCTTCATCCCTTGAGTACTGCATTGTGGTTGGTGCTCCAGTTTCACCTCAGATACAGAAGAGCATGGGCTGCAGTGTGAGCTGGGAGAGTCCTGGCTGCAGGCTGACATGACCCTGGTGGCAGTCTAAGCAATGCCCATGTCCTAGTGAAGTGTGACAGCCTGGCCTCAACTGCTTGTGCTAAGAAGTGTTCCCTGCTCTCTCCAGTCTTGCCCCCTGGTGGTTCAGTCCAAGCAAATCATTTAGCCAGAACAGCTAGGTCCAGAGCAAAACCCAGAGTATGTGTATTTATGTGTGAGTGTTTTGCGTGCATGTATGTTAGTGTACTATATCTGAACTGTGCCTGTGGAGACCAGAGGAGGTGATGGATCCCTCTGGGACTGGAGTTACAAGATGGTTGTGAGTCACCAAGTGGGTGCTTGGAATTGAAACAGTCCTGCATAAAAGCAGCCAAGGCTCTTAACCTCTGGGCCATTAGCTCCCCAAAACCAGTGTTTTGAGAGAGAGTCAGGGGAGAACGTAGATGTCTCAAAAAATACCTACTCTTTCTAGAAAGCCATTTAGACATAGACTTTCATCTCTCCAGCTTGGAGAGGTGAGGGAAGAGCCCAACACTGATATTATAGCGGTTGCTGGTGCCGATGGCATGTCCCAAGGTTCCCTAATCACTGTGTGTTCTTCGGAGCTGGAGCGGTGCTCTGATTGTGTTCCTGATAAGAAACCTAAGGGTTTCACCAGTGTGTGCAAGAGAAGTGGACTTGATCGGCTTTTCAGGGGCCAGAGTATAACTATGAGATAGATTGATGGAGCCGGCAGGCCCTCTGTCCCTGTCCACAAATTCCCTGGGCCATTTCTGCAGTGGTCCCTGGCCCAGCTTTTTGGAGCAGCGTCTTGGAGGTAGAGGAGAAGAGGAGCGCGATGGTGATGGGACAGAGAGGAAGGACAGCTTTGCACAGGACTTAGTACCATCCGGAGAAGGCGGAGCCATCCGGTTCTGGGTGGTTGCTAGGTGACCTAGGGCTGGTAGCTCCACCCCCATGGAGCTGAGGAGGGTGGGTGCATGACGTCAGGTGGAGCTGCTGCTGCTGCGGCCACTGAGACAGCCATCAGCTTAAAGCTGACGACCCGGGCCAGGCAAGGCTCCGGAGCCTGCTGGAGCTCGCAATCGCCCGCTGACCTGCTGTGCACCTGCCACGGCCTGTGTCGCTGCAGCCGCCTTTGCCTGTCCGGAAGCTAAGGCTGCATTGTTGGGATTTGATGCACTAATCTCCTGTCTCCGCCGCCTTTCCCTCCCTCCCTTCGTCTGTCTTTCCTCCCTGTGTTTGTCTGCCCTCCTCTGTACCTCCCTCTCTTTCCTCTCCTTGCTTTCTGTGGTTTTCTGCAATGATGAGACAGGCACCGACAGCCCGAAAGGTACTCTTGCTTGCTCTGGTCCTGCTGCTGGGTTGCCAGGGCAATGGAAGCAGGCTGCTGGGGTGGGGGTGGGGGCTGATTGACTTCATCAGTCTACCTGGCAGGGGGAGGAGGGTAAGGATGAAGGGGAGGGGGTAGGGAGAGGTGTGTGTCACTACTGTGCCCCACCCTGGACATTTATGTTCCTTGATCTACTTGCTTTGACTCTGATTGAGTCTGTACCAGGTCATTTACTCAGTGGCCTCACAGGCGTGGGCTTCAGGCAATCCCTACTGCAGTCAGGGTTGGGAGGGTTTACTGGGGTCCAGCCTGAGGCAGCTAGCCAGCTGCCTCAGTGCACGAAGCAGGCCTACTTACCAACCTTTGCTGGACTGACTTATGCTTGTTCTCCCAGCATCCTGCTTCCCCAGAGTCTGTGCTAGGGAGTTTACTGGGACAGGATGTGGACCCTAGAATAGTTTTTGATCCACAGCTGTGGTGAATTAGTCTTGAGCAGAGAGTGGAGGTTGGCCATCTTGGACTCAGTGTCTGCAGAAAACAGAGCTCAAGCTGAATCTTGACTTGCTAGAGAGTCAGGCACAGGCAGCAAGCCTCTGGGAGTTGGAGCTAATTGCCCCTCAGCCACTCCTGGGTGGCTTGGGGAAGAGTGGTTCCTAAGGGTTGCTGCCCACCCCCACTCCTCCAGCTGGGAGGGTTACTTTGCTGAGCTGTGGGCTTTTACTAATGCAGTATTCATAGTACTGACACCTGAGCCCTCTGCCTTAGGGAGGGAGCCTGCTGCAAGGCCTGGACCTGAAGGAGGCTGAGGGAGGGGATCAACCCTGTTCTTTCTTAGTGGTCTGAGCGCCACTTTCTGGGTGTCTGCACTCCTGTCAGTGGGCCGGGTCCTAGGGTGTCCTCTCTAGAGTCTAGCACTTGAAGGAACAGGCTGACTTGGGAAAGTCCTTGGGAGAGGTGGATGGGTGGGGCCCCTAGCCTAGAGTGGCAGAGATTGTTCACAGAAGGATGCTCTCTGGAGGCCTTCTTGCCAGCTGCTGCCTTTGGTCTCCTGTGGCTCAGCCTAGGGACCAGACTTGTGGGAGCTGAAGGGGCCTGGGGAAGTGAAGCCTCCAAGGGTTAGGTAGACATGAGAGGGGAACAGGGCAGCGGGAGATGCGAGCCTGGAGCAGGTATAGGCCATCCCCTTGGGAGGCAGTGGGACAGGGGTGGTGGGCTAGCCTTGTCTATTGCTGCTTCTGCTCTCATTGCTACCTCTGTCCTCCTGCCATGACCCTCTCTTTCCTGACTCCTACTCTTCTGGCTCCTGTTGCCTGTCCAGACCACAACTCGACGGCCCAAGGTGAGAACAAGCAGGTCTCTGTAAGCCACTGCTGAGTGCACAGATAGTTCAGGCATGTGCATGTATGTGGGCATGCATGCTAGCAAATGAATGTTGGTTGCAGTATACCAGGGAGAAGAGGAGGAGCTTGAGGCTGGTAACTGGACTCCTGGGGAAGTGATTTCTAATTCTTTTTTTTTTTTTAATGTGTATGAGTGTTGCCTGCATGGATGTTTGTCATATGTGTGCCCTCAGAGGCCAAGAGAAGGTGTCAGATATTTTGCCATGTGAGTTCTGGGAATGAAACCTGGTTCCTCTGGAAGAGCGGCCAGTGCTCTTCTGAGGCGTCTCTCCAGGCCGGACAGTTTCTAATGCTTAAGAGGCCATCTTAGCCAGTAGATTGGGTGTGGAAGAGCAGTGAGGGAGTTACGGCTAATCAAGACAGGCTTTGATCAGCTTGGAAGGGTGAGATTATAAGAAGTGAGTGCTCTGATGTCTGCAGGGGCAAGGGTTAGGGGGGCATTTGTGGGTAGTCTGGGGTTCAACATCACAGGGGCAGCACTGTCTACCCCAGGGTTTGTGGCTTCCTGAAAGCTGGCCACCCCCCATGCCCCCACCTCACCCCTCCCAGCTTGAACAGGGGCCTGGATACTGTTACTTAGTTAGAGCTTTGTCCTGGAGGAGGAGGTAAGGGGTTGGCTCTGGCTCTACTTACCTTGCTTGGAGGGTAGTCTGTACGGGTTTCCATCTTAGCCCAGTATCCTATAAGATCCGTTGGCATAGACCTAAGGAGTGAAGACTGGGGAGGCTTACTGGGAGAGCAAGCCTGACTCCACCCTTTCGGCCCCGCCCGCCCTCTTTCCGAACTGGACAATTGAGAACAGTCTCTAATCTGTTCTGTGCTTCTGGGCATGACATTGAGGCACTTCTGTCTGCTGGGGGAGTCAGGCATACACCCAGCGTGATGGGAATGGGAGCAGTAAGAAGTTGCTAGAGTGATCACAAGTGGGCCACAGAGGGGAGTCCTGGGGAGTGAGAGCCAGTTTTGAAGGTTAGAGCAGAGTGGGGAGGAATGTGGACACAGTGCCAAGGGAGGAACCTTGTAATCTTATGTCTCCCATTCTCTCTTCTTTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGAGGAATGTGGACACAG
60.04
TCTACTGCTTCCTCCTGCCC
60.98
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGCAGAGTGGGGAGGAAT
59.96
TCTACTGCTTCCTCCTGCCC
60.98
160
PCR template sequence:
AGAGCCAGTTTTGAAGGTTAGAGCAGAGTGGGGAGGAATGTGGACACAGTGCCAAGGGAGGAACCTTGTAATCTTATGTCTCCCATTCTCTCTTCTTTTCGTGAGCGGTTTGGCACTGTAAGGGAGGAGCACAGAGCGGGAGGGAGGAAGGCCCAGGCTGGGCAGGAGGAAGCAGTAGATGGGTCTGGATTGAGTTAGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
68
Interacting miRNAs (#binding sites)
mmu-miR-207(7), mmu-miR-31-5p(3), mmu-miR-214-3p(3), mmu-miR-150-5p(2), mmu-miR-101a-3p(2), mmu-miR-29b-3p(2), mmu-miR-29a-3p(2), mmu-miR-29c-3p(2), mmu-miR-30c-5p(2), mmu-miR-351-5p(2), mmu-miR-673-5p(2), mmu-miR-484(2), mmu-miR-466b-3p(2), mmu-miR-296-5p(1), mmu-miR-16-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-103-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-135a-5p(1), mmu-miR-200c-3p(1), mmu-miR-122-5p(1), mmu-miR-211-5p(1), mmu-miR-322-5p(1), mmu-miR-19a-3p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-217-5p(1), mmu-miR-320-3p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-185-5p(1), mmu-miR-339-5p(1), mmu-miR-181b-5p(1), mmu-miR-30d-5p(1), mmu-let-7d-5p(1), mmu-miR-24-3p(1), mmu-miR-503-5p(1), mmu-miR-30b-5p(1), mmu-miR-149-5p(1), mmu-miR-434-3p(1), mmu-miR-433-3p(1), mmu-miR-411-3p(1), mmu-miR-96-5p(1), mmu-miR-199b-3p(1), mmu-miR-182-5p(1), mmu-miR-194-5p(1), mmu-miR-199a-3p(1), mmu-miR-467b-5p(1), mmu-miR-541-5p(1), mmu-miR-324-3p(1), mmu-miR-107-3p(1), mmu-miR-98-5p(1), mmu-miR-705(1), mmu-miR-499-5p(1), mmu-miR-690(1), mmu-miR-29b-2-5p(1), mmu-miR-342-3p(1), mmu-miR-188-3p(1), mmu-miR-1199-5p(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-99a-5p(1), mmu-miR-181d-5p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCTCTTCTTTTCGTGAGCGGTTTGG
siRNA sets
AAACCGCTCACGAAAAGAA, CAAACCGCTCACGAAAAGA, AACCGCTCACGAAAAGAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.601648026
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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